coxme: Mixed Effects Cox Models

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Cox proportional hazards models containing Gaussian random effects, also known as frailty models.

Author
Terry M. Therneau [aut, cre]
Date of publication
2015-06-15 17:08:23
Maintainer
Terry M. Therneau <therneau@mayo.edu>
License
LGPL-2
Version
2.2-5
URLs

View on CRAN

Man pages

anova.coxme
Analysis of Deviance for a Cox model.
coxme
Fit a mixed effects Cox model
coxme.control
Auxillary parameters for controlling coxme fits.
coxmeFull
Variance family function for coxme fits.
coxmeMlist
Coxme variance function
coxme.object
Coxme regression output object
eortc
Simulated data set based on an EORTC trial
expand.nested
Expand nested factors
fixed.effects
Import from package 'nlme'
fixef.coxme
Extraction functions for Coxme
fixef.lmekin
Extraction functions for Lmekin
lmekin
Fit a linear mixed effects model
lmekin.control
Auxillary parameters for controlling lmekin fits.
lmekin.object
lmekin object
logLik.coxme
The logLik method for coxme objects
predict.coxme
Predictions for a coxme object.
print.coxme
Print method for a coxme fit.
print.lmekin
Print function for lmekin
ranef
Import from package 'nlme'
VarCorr
Import from package 'nlme'

Files in this package

coxme
coxme/inst
coxme/inst/NEWS.Rd
coxme/inst/COPYRIGHTS
coxme/inst/doc
coxme/inst/doc/variance.R
coxme/inst/doc/laplace.pdf
coxme/inst/doc/lmekin.pdf
coxme/inst/doc/variance.Rnw
coxme/inst/doc/variance.pdf
coxme/inst/doc/laplace.R
coxme/inst/doc/lmekin.R
coxme/inst/doc/coxme.pdf
coxme/inst/doc/coxme.Rnw
coxme/inst/doc/lmekin.Rnw
coxme/inst/doc/laplace.Rnw
coxme/inst/doc/coxme.R
coxme/tests
coxme/tests/refine2.R
coxme/tests/strata1.Rout.save
coxme/tests/slope4.R
coxme/tests/test2.Rout.save
coxme/tests/strata1.R
coxme/tests/test1.R
coxme/tests/lmekin1.Rout.save
coxme/tests/refine.Rout.save
coxme/tests/nest2.Rout.save
coxme/tests/test0.R
coxme/tests/slope3.Rout.save
coxme/tests/test4.Rout.save
coxme/tests/test3.Rout.save
coxme/tests/test0.Rout.save
coxme/tests/twoterm.R
coxme/tests/shrink.Rout.save
coxme/tests/refine1.R
coxme/tests/nest1.Rout.save
coxme/tests/test4.R
coxme/tests/slope2.Rout.save
coxme/tests/brdat.rda
coxme/tests/bdstest.Rout.save
coxme/tests/brfit.R
coxme/tests/slope2.R
coxme/tests/twoterm.Rout.save
coxme/tests/refine3.Rout.save
coxme/tests/test3.R
coxme/tests/slope3.R
coxme/tests/refine2.Rout.save
coxme/tests/test2.R
coxme/tests/refine3.R
coxme/tests/lmekin2.R
coxme/tests/lmekin2.Rout.save
coxme/tests/shrink.R
coxme/tests/test1.Rout.save
coxme/tests/lmekin1.R
coxme/tests/refine1.Rout.save
coxme/tests/refine.R
coxme/tests/bdstest.R
coxme/tests/slope1.Rout.save
coxme/tests/nest2.R
coxme/tests/nest1.R
coxme/tests/slope4.Rout.save
coxme/tests/slope1.R
coxme/src
coxme/src/bdsmatrix.c
coxme/src/coxfit6a.c
coxme/src/coxfit6c.c
coxme/src/coxfit6b.c
coxme/src/bdsmatrix.h
coxme/src/coxfit6.h
coxme/src/bdsmatrix_stub.h
coxme/src/coxfit6d.c
coxme/src/coxmeS.h
coxme/src/agfit6d.c
coxme/src/agfit6b.c
coxme/src/bds_dsc.c
coxme/NAMESPACE
coxme/noweb
coxme/noweb/Makefile
coxme/noweb/all.toc
coxme/noweb/all.log
coxme/noweb/all.pdf
coxme/noweb/build.Rnw
coxme/noweb/noweb.sty
coxme/noweb/main.Rnw
coxme/noweb/fit.Rnw
coxme/noweb/basic.Rnw
coxme/noweb/all.out
coxme/noweb/ranef.Rnw
coxme/noweb/formula.Rnw
coxme/noweb/varfun2.Rnw
coxme/noweb/varfun.Rnw
coxme/noweb/all.tex
coxme/noweb/compute2.nw
coxme/noweb/figure
coxme/noweb/figure/figtree1.pdf
coxme/noweb/figure/ptplot.s
coxme/noweb/figure/figtree1.r
coxme/noweb/all.aux
coxme/noweb/lmekin.Rnw
coxme/noweb/reconcile.Rnw
coxme/noweb/all.nw
coxme/noweb/bdsmatrix.Rnw
coxme/noweb/Readme
coxme/noweb/compute.nw
coxme/data
coxme/data/eortc.rda
coxme/R
coxme/R/expand.nested.R
coxme/R/coxmeMlist.R
coxme/R/anova.coxmelist.R
coxme/R/coxme.varcheck.R
coxme/R/formula.R
coxme/R/anova.coxme.R
coxme/R/bdsmatrix.R
coxme/R/print.lmekin.R
coxme/R/ranef.R
coxme/R/lmekin.R
coxme/R/predict.coxme.R
coxme/R/coxmeFull.R
coxme/R/coxme.fit.R
coxme/R/print.coxme.R
coxme/R/coxme.control.R
coxme/R/coxme.R
coxme/R/lmekin.control.R
coxme/vignettes
coxme/vignettes/figures
coxme/vignettes/figures/lung3.pdf
coxme/vignettes/gaw.rda
coxme/vignettes/variance.Rnw
coxme/vignettes/coxme.Rnw
coxme/vignettes/lmekin.Rnw
coxme/vignettes/laplace.Rnw
coxme/MD5
coxme/build
coxme/build/vignette.rds
coxme/DESCRIPTION
coxme/man
coxme/man/fixef.coxme.Rd
coxme/man/fixef.lmekin.Rd
coxme/man/expand.nested.Rd
coxme/man/VarCorr.Rd
coxme/man/lmekin.control.Rd
coxme/man/predict.coxme.Rd
coxme/man/coxme.control.Rd
coxme/man/ranef.Rd
coxme/man/coxmeFull.Rd
coxme/man/coxmeMlist.Rd
coxme/man/coxme.object.Rd
coxme/man/fixed.effects.Rd
coxme/man/eortc.Rd
coxme/man/anova.coxme.Rd
coxme/man/print.lmekin.Rd
coxme/man/lmekin.Rd
coxme/man/coxme.Rd
coxme/man/lmekin.object.Rd
coxme/man/print.coxme.Rd
coxme/man/logLik.coxme.Rd
coxme/cleanup
coxme/cleanup.win