View source: R/crest.calibrate.R
crest.calibrate | R Documentation |
pdfs
This function fits the climate response of the selected taxa to the selected climate variables.
crest.calibrate( x, bin_width = x$parameters$bin_width, shape = x$parameters$shape, npoints = x$parameters$npoints, geoWeighting = x$parameters$geoWeighting, climateSpaceWeighting = x$parameters$climateSpaceWeighting, verbose = TRUE )
x |
A |
bin_width |
The width of the bins used to correct for unbalanced climate state. Use values that split the studied climate gradient in 15-25 classes (e.g. 2°C for temperature variables). Default is 1. |
shape |
The imposed shape of the species |
npoints |
The number of points to be used to fit the |
geoWeighting |
A boolean to indicate if the species should be weighting by the square root of their extension when estimating a genus/family level taxon-climate relationships. |
climateSpaceWeighting |
A boolean to indicate if the species |
verbose |
A boolean to print non-essential comments on the terminal
(default |
A crestObj
object containing the spatial distributions
and the climate space.
## Not run: data(crest_ex_pse) data(crest_ex_selection) data(crest_ex) x <- crest.get_modern_data( df = crest_ex, pse = crest_ex_pse, taxaType = 0, climate = c("bio1", "bio12"), selectedTaxa = crest_ex_selection, dbname = "crest_example", verbose = FALSE ) x <- crest.calibrate(x, geoWeighting = TRUE, climateSpaceWeighting = TRUE, bin_width = c(2, 50), shape = c("normal", "lognormal"), verbose = FALSE ) ## End(Not run)
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