View source: R/dbGetDistribTaxa.R
getDistribTaxa | R Documentation |
Extract all possible TaxonIDs corresponding to the provided taxonomical description, which can be at the family, the genus or the species levels.
getDistribTaxa( taxIDs, climate = NA, xmn = NA, xmx = NA, ymn = NA, ymx = NA, continents = NA, countries = NA, basins = NA, sectors = NA, realms = NA, biomes = NA, ecoregions = NA, elev_min = NA, elev_max = NA, elev_range = NA, year_min = 1900, year_max = 2021, nodate = TRUE, type_of_obs = c(1, 2, 3, 8, 9), dbname = "gbif4crest_02" )
taxIDs |
A vector of accepted Taxa IDs (as returned by |
climate |
A vector of the climate variables to extract. See
|
xmn, xmx, ymn, ymx |
The coordinates defining the study area. |
continents |
A vector of the continent names defining the study area. |
countries |
A vector of the country names defining the study area. |
basins |
A vector of the ocean names defining the study area. |
sectors |
A vector of the marine sector names defining the study area. |
realms |
A vector of the studied botanical realms defining the study area. |
biomes |
A vector of the studied botanical biomes defining the study area. |
ecoregions |
A vector of the studied botanical ecoregions defining the study area. |
elev_min, elev_max |
Parameters to only selected grid cells with an
elevation higher than elev_min or lower than elev_max (default is
' |
elev_range |
Parameters discard the grid cell with a high elevation
range (default is |
year_min, year_max |
The oldest and youngest occurrences accepted (default is 1900-2021). |
nodate |
A boolean to accept occurrences without a date (can overlap
with occurrences with a date; default |
type_of_obs |
The type of observation to use in the study. 1: human
observation, 2: observation, 3: preserved specimen, 4: living specimen,
5: fossil specimen, 6: material sample, 7: machine observation, 8:
literature, 9: unknown (Default |
dbname |
The name of the data source database. |
A matrix of occurrence records with the associated climate.
getTaxonID
for taxIDs, accClimateVariables
for a list of accepted climate variable names, accCountryNames
for a list of accepted continent and country names, accRealmNames
for a list of accepted realm, biome and ecoregion names.
## Not run: taxIDs <- getTaxonID("Zamiaceae", "Ceratozamia") distrib <- getDistribTaxa(taxIDs, "bio1", -90, 90, -90, 90, continents = "Europe", countries = c("Germany", "Netherlands", "Sweden"), realms = "Palaearctic" ) distrib ## End(Not run)
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