View source: R/plot.explore_calibration_dataset.R
explore_calibration_dataset | R Documentation |
This function will extract the distributions of all the studied climate proxy and plot the data on a map.
explore_calibration_dataset( taxaType, save = FALSE, filename = "calibrationDataset.pdf", col = viridis::viridis(22)[3:22], width = 7.48, height = 7.48, as.png = FALSE, png.res = 300, xmn = NA, xmx = NA, ymn = NA, ymx = NA, continents = NA, countries = NA, realms = NA, biomes = NA, ecoregions = NA, dbname = "gbif4crest_02" )
taxaType |
A numerical index (between 1 and 6) to define the type of palaeoproxy used: 1 for plants, 2 for beetles, 3 for chironomids, 4 for foraminifers, 5 for diatoms and 6 for rodents. The example dataset uses taxaType=0 (pseudo-data). Default is 1. |
save |
A boolean to indicate if the diagram should be saved as a pdf file.
Default is |
filename |
An absolute or relative path that indicates where the diagram
should be saved. Also used to specify the name of the file. Default:
the file is saved in the working directory under the name
|
col |
A colour gradient. |
width, height |
The dimensions of the pdf file (default 7.48in ~19cm). |
as.png |
A boolean to indicate if the output should be saved as a png.
Default is |
png.res |
The resolution of the png file (default 300 pixels per inch). |
xmn, xmx, ymn, ymx |
The coordinates defining the study area. |
continents |
A vector of the continent names defining the study area. |
countries |
A vector of the country names defining the study area. |
realms |
A vector of the studied botanical realms defining the study area. |
biomes |
A vector of the studied botanical biomes defining the study area. |
ecoregions |
A vector of the studied botanical ecoregions defining the study area. |
dbname |
The name of the database. Default is |
The distribution data
## Not run: #> Replace 'tempdir()' by the location where to save the sample (e.g. 'getwd()') d = explore_calibration_dataset(2, xmn=-85, xmx=-30, ymn=-60, ymx=15, save=TRUE, width = 4, height = 7.5, filename=file.path(tempdir(), 'calibrationDataset.pdf') ) head(d) ## End(Not run)
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