cuperdec: Cumulative Percent Decay Curve Generator

Calculates and visualises cumulative percent 'decay' curves, which are typically calculated from metagenomic taxonomic profiles. These can be used to estimate the level of expected 'endogenous' taxa at different abundance levels retrieved from metagenomic samples, when comparing to samples of known sampling site or source. Method described in Fellows Yates, J. A. et. al. (2021) Proceedings of the National Academy of Sciences USA <doi:10.1073/pnas.2021655118>.

Package details

AuthorJames A. Fellows Yates [aut, cre] (<https://orcid.org/0000-0001-5585-6277>)
MaintainerJames A. Fellows Yates <jfy133@gmail.com>
LicenseMIT + file LICENSE
Version1.1.0
URL https://github.com/jfy133/cuperdec
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("cuperdec")

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cuperdec documentation built on Sept. 13, 2021, 1:06 a.m.