Description Usage Arguments Value Examples
Performs the initial decay curve based on percentage of 'target' isolation source along a rank of most to least abundant taxa for a given sample.
1 | simple_filter(curves, percent_threshold)
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curves |
A cuperdec curve table calculated with
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percent_threshold |
A database file loaded with
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A tibble with each row showing each sample and whether it passed the specified filter.
1 2 3 4 5 6 7 8 | data(cuperdec_taxatable_ex)
data(cuperdec_database_ex)
taxa_table <- load_taxa_table(cuperdec_taxatable_ex)
iso_database <- load_database(cuperdec_database_ex, target = "oral")
curve_results <- calculate_curve(taxa_table, iso_database)
simple_filter(curve_results, percent_threshold = 50)
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