utils.basic.stats: Calculates mean observed heterozygosity, mean expected...

In dartR.base: Analysing 'SNP' and 'Silicodart' Data - Basic Functions

Calculates mean observed heterozygosity, mean expected heterozygosity and FIS per locus, per population and various population differentiation measures @family utilities

Description

WARNING: UTILITY SCRIPTS ARE FOR INTERNAL USE ONLY AND SHOULD NOT BE USED BY END USERS AS THEIR USE OUT OF CONTEXT COULD LEAD TO UNPREDICTABLE OUTCOMES.

Usage

utils.basic.stats(x)

Arguments

x	A genlight object containing the SNP genotypes [required].

Details

This is a re-implementation of hierfstat::basics.stats specifically for genlight objects. Formula (and hence results) match exactly the original version of hierfstat::basics.stats but it is much faster.

Value

A list with with the statistics for each population

Author(s)

Luis Mijangos and Carlo Pacioni (post to https://groups.google.com/d/forum/dartr)

Examples

require("dartR.data")
out <- utils.basic.stats(platypus.gl)

dartR.base documentation built on April 4, 2025, 2:45 a.m.