utils.read.ped: An internal script [Custodian to provide a title]

In dartR.base: Analysing 'SNP' and 'Silicodart' Data - Basic Functions

An internal script [Custodian to provide a title]

Description

WARNING: UTILITY SCRIPTS ARE FOR INTERNAL USE ONLY AND SHOULD NOT BE USED BY END USERS AS THEIR USE OUT OF CONTEXT COULD LEAD TO UNPREDICTABLE OUTCOMES.

Usage

utils.read.ped(
  file,
  snps,
  which,
  split = "\t| +",
  sep = ".",
  na.strings = "0",
  lex.order = FALSE,
  show_warnings = TRUE
)

Arguments

file	Custodian to provide
snps	Custodian to provide
which	Custodian to provide
split	Custodian to provide
sep	Custodian to provide
na.strings	Custodian to provide
lex.order	Custodian to provide
show_warnings	Custodian to provide #[Custodian to provide other parameter descriptions]

Details

#[Custodian to provide details]

Value

The resultant genlight object

Author(s)

Custodian: Luis Mijangos (Post to https://groups.google.com/d/forum/dartr)

See Also

Other utilities: gl.alf(), utils.check.datatype(), utils.collapse.matrix(), utils.dart2genlight(), utils.dist.binary(), utils.flag.start(), utils.hamming(), utils.het.pop(), utils.impute, utils.is.fixed(), utils.jackknife(), utils.n.var.invariant(), utils.plot.save(), utils.read.fasta(), utils.recalc.avgpic(), utils.recalc.callrate(), utils.recalc.freqhets(), utils.recalc.freqhomref(), utils.recalc.freqhomsnp(), utils.recalc.maf(), utils.reset.flags(), utils.transpose(), utils.vcfr2genlight.polyploid()

dartR.base documentation built on April 4, 2025, 2:45 a.m.