utils.transpose: An internal utility function to transpose a genlight object.

In dartR.base: Analysing 'SNP' and 'Silicodart' Data - Basic Functions

An internal utility function to transpose a genlight object.

Description

WARNING: UTILITY SCRIPTS ARE FOR INTERNAL USE ONLY AND SHOULD NOT BE USED BY END USERS AS THEIR USE OUT OF CONTEXT COULD LEAD TO UNPREDICTABLE OUTCOMES.

Usage

utils.transpose(x, parallel = FALSE)

Arguments

x	name of the genlight object
parallel	if TRUE, use parallel processing capability

Details

This is a function to transpose a genlight object, that is, to set loci as entities and individuals as attributes.

Value

a transposed genlight object

See Also

Other utilities: gl.alf(), utils.check.datatype(), utils.collapse.matrix(), utils.dart2genlight(), utils.dist.binary(), utils.flag.start(), utils.hamming(), utils.het.pop(), utils.impute, utils.is.fixed(), utils.jackknife(), utils.n.var.invariant(), utils.plot.save(), utils.read.fasta(), utils.read.ped(), utils.recalc.avgpic(), utils.recalc.callrate(), utils.recalc.freqhets(), utils.recalc.freqhomref(), utils.recalc.freqhomsnp(), utils.recalc.maf(), utils.reset.flags(), utils.vcfr2genlight.polyploid()

dartR.base documentation built on April 4, 2025, 2:45 a.m.