| AbstractTableDescriber-class | Base Class for Specific Metadata Parsers |
| addData | Add a D1Object containing a data object to a DataPackage |
| archive | Archive an object on a Member Node or Coordinating Node,... |
| asDataFrame | return the D1Object data as a data.frame. |
| auth_delete | DELETE a resource with authenticated credentials. |
| AuthenticationManager | Create an AuthenticationManager object |
| AuthenticationManager-class | Manage DataONE authentication. |
| auth_get | GET a resource with authenticated credentials if available. |
| auth_head | Send a http HEAD request for a resource with authenticated... |
| auth_post | POST a resource with authenticated credentials. |
| auth_put | PUT a resource with authenticated credentials. |
| auth_put_post_delete | POST, PUT, or DELETE a resource with authenticated... |
| canRead | Test whether the provided subject can read an object. |
| CertificateManager | Create a CertificateManager object |
| CertificateManager-class | CertficateManager provides mechanisms to obtain, load,... |
| CNode | Create a CNode object. |
| CNode-class | Provides R API to DataONE Coordinating Node services. |
| convert.csv | Convert a DataFrame to Standard CSV. |
| createD1Object | Create the Object in the DataONE System |
| createDataPackage | Create a DataPackage on a DataONE Member Node |
| createObject | Create an object on a Member Node. |
| D1Client | The DataONE client class used to download, update and search... |
| D1Client-class | The D1Client class contains methods that perform high level... |
| D1Client-initialize | Initialize a D1Client object |
| d1_errors | This function parses a DataONE service response message for... |
| d1IdentifierSearch | Query the DataONE Solr endpoint of the Coordinating Node. |
| D1Node | Create a D1Node object. |
| D1Node-class | A base class for CNode and MNode. |
| D1Node-initialize | Initialize a D1Node |
| D1Object | Create a D1Object instance. |
| D1Object-class | D1Object (Defunct) is a representation of a DataObject. |
| D1Object-initialize | Initialize a D1Object |
| d1SolrQuery | A method to query the DataONE solr endpoint of the... |
| data.characterEncoding | CharacterEncoding |
| data.formatFamily | Data Format |
| dataone | Search, download and upload data to the DataONE network. |
| dataone-defunct | Defunct |
| dataone-deprecated | Deprecated |
| data.tableAttributeNames | returns the attribute names |
| data.tableAttributeOrientation | The Attribute (Header) Orientation |
| data.tableAttributeStorageTypes | returns the attributes' data storage types |
| data.tableAttributeTypes | returns the attributes' data types |
| data.tableFieldDelimiter | Field Delimiter |
| data.tableMissingValueCodes | returns missing value codes |
| data.tableQuoteCharacter | Quote Character |
| data.tableSkipLinesHeader | Number of lines to skip before reading data |
| describeObject | Efficiently get systemmetadata for an object. |
| documented.d1Identifiers | Get DataONE identifiers |
| documented.entityNames | Get the entity names associated with each table |
| documented.sizes | Get the sizes of the described data tables. |
| downloadCert | Open the CILogon Certificate download page in the default... |
| downloadObject | Download an object from the DataONE Federation to Disk. |
| echoCredentials | Echo the credentials used to make the call. |
| EMLParser | Construct an EML parser object. |
| EMLParser-class | Handler for Parsing Table Format Details from Metadata |
| encodeSolr | Encode the input for Solr Queries |
| encodeUrlPath | Encode the Input for a URL Path Segment. |
| encodeUrlQuery | Encode the Input for a URL Query Segment. |
| evaluateAuth | Evaluate DataONE authentication. |
| generateIdentifier | Get a unique identifier that is generated by the Member Node... |
| getAuthExpires | Get the expiration date of the current authentication method. |
| getAuthMethod | Get the current valid authentication mechanism. |
| getAuthSubject | Get the authentication subject. |
| getCapabilities | Get the node capabilities description, and store the... |
| getCert | Get the DataONE X.509 Certificate location. |
| getCertExpires | Show the date and time when an X.509 certificate expires. |
| getCertInfo | Get X.509 Certificate information |
| getCertLocation | Get the file path on disk of the client certificate file. |
| getChecksum | Get the checksum for the data object associated with the... |
| getCN | Get the coordinating node associated with this D1Client... |
| getD1Object | Download a data object from the DataONE Federation. |
| getData | Get the data content of a D1Object. |
| getDataObject | Download a file (and it's associated system metadata) from... |
| getDataPackage | Download data from the DataONE Federation as a DataPackage. |
| getEndpoint | Return the URL endpoint for the DataONE Coordinating Node. |
| getErrorDescription | Extract an error message from an http response. |
| getFormat | Get information for a single DataONE object format |
| getFormatId | Get the FormatId of the D1Object |
| getIdentifier | Get the Identifier of the D1Object |
| getMetadataMember | Get the DataObject containing package metadata |
| getMN | Get a member node client based on its node identifier. |
| getMNode | Get a reference to a node based on its identifier |
| getMNodeId | Get the member node identifier associated with this D1Client... |
| getObject | Get the bytes associated with an object on this Node. |
| getPackage | Download a data package from a member node. |
| getQueryEngineDescription | Query a node for the list of query engines available on the... |
| getSystemMetadata | Get the metadata describing system properties associated with... |
| getToken | Get the value of the DataONE Authentication Token, if one... |
| getTokenInfo | Get authentication token information |
| get_user_agent | User agent string |
| hasReservation | Checks to determine if the supplied subject is the owner of... |
| isAuthExpired | Check if the currently valid authentication method has... |
| isAuthorized | Check if an action is authorized for the specified identifier |
| isAuthValid | Verify authentication for a member node. |
| isCertExpired | Determine if an X.509 certificate has expired. |
| listFormats | List all object formats registered in DataONE. |
| listMemberNodes | List DataONE Member Nodes. |
| listNodes | Get the list of nodes associated with a CN |
| listObjects | Retrieve the list of objects that match the search parameters |
| listQueryEngines | Query a node for the list of query engines available on the... |
| MNode | Create a MNode object representing a DataONE Member Node... |
| MNode-class | Provides R API to DataONE Member Node services. |
| obscureAuth | Temporarily disable DataONE authentication. |
| obscureCert | Obscure the CILogon Client Certificate |
| parseCapabilities | Construct a Node, using a passed in capabilities XML |
| parseSolrResult | Parse Solr output into an R list |
| ping | Test if a node is online and accepting DataONE requests |
| query | Search DataONE for data and metadata objects |
| reserveIdentifier | Reserve a identifier that is unique in the DataONE network. |
| resolve | Get a list of coordinating nodes holding a given pid. |
| restoreAuth | Restore authentication (after being disabled with... |
| restoreCert | Restore the CILogon client certificate by renaming it to its... |
| setMNodeId | Set the member node identifier to be associated with the... |
| setObsoletedBy | Set a pid as being obsoleted by another pid |
| setPublicAccess | Make the object publicly readable. |
| showAuth | Display all authentication information |
| showClientSubject | Get DataONE Identity as Stored in the CILogon Certificate. |
| updateObject | Update an object on a Member Node, by creating a new object... |
| updateSystemMetadata | Update the system metadata associated with an object. |
| uploadDataObject | Upload a DataObject to a DataONE member node. |
| uploadDataPackage | Upload a DataPackage to a DataONE member node. |
