dc3netcom: Find Common Network
In dc3net: Inferring Condition-Specific Networks via Differential Network Inference

Description Usage Arguments Details Value Author(s) References See Also

dc3netcom finds common network list.

1	dc3netcom(netTemp, vals, rankdif, percent)

`netTemp`	Test network, e.g. tumor network.
`vals`	Statistics in the other (control) condition.
`rankdif`	Predefined rank cut-off parameter.
`percent`	Predefined rate parameter.

dc3netcom finds differential network list.

dc3dif returns common network data matrix. The data matrix includes differential network list with gene names, mim indexes, probe names, control indexes, control mutual information rates and control ranks.

Gokmen Altay

Altay, G. et. al. "Genome-wide differential gene network analysis software and an application in LnCap prostate cancer", bioRxiv, 2017. Altay, G., Asim, M., Markowetz, F., Neal, D.E. (2011) Differential C3NET reveals disease netwokrs of direct physical interactions. BMC Bioinformatics. 12: 296.

dc3net

dc3net documentation built on May 2, 2019, 10:14 a.m.