Description Usage Arguments Details Value Author(s) References See Also
dc3netdif
finds differential network list.
1 | dc3netdif(netTemp, vals, rankdif, percent)
|
netTemp |
Test network, e.g. tumor network. |
vals |
Statistics in the other (control) condition. |
rankdif |
Predefined rank cut-off parameter. |
percent |
Predefined rate parameter. |
dc3netdif
finds differential network list.
dc3netdif
returns differential network data matrix. The data matrix includes differential network list with gene names, mim indexes, probe names, control indexes, control mutual information rates and control ranks.
Gokmen Altay
Altay, G. et. al. "Genome-wide differential gene network analysis software and an application in LnCap prostate cancer", bioRxiv, 2017. Altay, G., Asim, M., Markowetz, F., Neal, D.E. (2011) Differential C3NET reveals disease netwokrs of direct physical interactions. BMC Bioinformatics. 12: 296.
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