Description Usage Arguments Details Value Author(s) References See Also
maxofMIM
takes the mutual information matrix as input and find max partner gene with highest mutual information value for each gene.
1 | maxofMIM(mim)
|
mim |
A symmetric square mutual information matrix, where the elements (i,j) correspond to the mutual information I(i,j) or I(j,i) between variables i and j. |
maxofMIM
scans each row of the mutual information matrix and find the column with the highest mutual information value for each row. Thus, it finds max partner gene with highest mutual information value for each gene.
maxofMIM
returns a data matrix that rows are probe/gene names and columns are mutual information values, row numbers of each gene and row numbers of partner gene with highest mutual information value, respectively.
Gokmen Altay
Altay, G. et. al. "Genome-wide differential gene network analysis software and an application in LnCap prostate cancer", bioRxiv, 2017. Altay, G., Asim, M., Markowetz, F., Neal, D.E. (2011) Differential C3NET reveals disease netwokrs of direct physical interactions. BMC Bioinformatics. 12: 296.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.