inst/staticdocs/RData.md

In dcGOR: Analysis of Ontologies and Protein Domain Annotations

Introduction

As part of the package, the built-in RData (with .RData extension) contain curated/compiled data, which can be broadly grouped into the following categories:

• Ontologies

Ontologies include Gene Ontology (GO) and its three subontologies (BP: Biological Process; MF: Molecular Function; CC: Cellular Component), Human Phenotype (HP) and its three subontologies (PA: Phenotypic Abnormality; ON: ONset and clinical course; MI: Mode of Inheritance), Disease Ontology (DO), and Mammalian Phenotype (MP). Terms in an ontology are organised as a direct acyclic graph (DAG), which is further stored as an object of the class igraph.

Documentations

For details, please refer to Documentations.

dcGOR documentation built on May 2, 2019, 3:34 p.m.