decode: Differential Co-Expression and Differential Expression Analysis

Integrated differential expression (DE) and differential co-expression (DC) analysis on gene expression data based on DECODE (DifferEntial CO-expression and Differential Expression) algorithm.

AuthorThomas Lui [aut, cre]
Date of publication2015-07-14 20:40:34
MaintainerThomas Lui <tlui27@yahoo.com>
LicenseGPL-3
Version1.2

View on CRAN

Files

decode
decode/inst
decode/inst/extdata
decode/inst/extdata/geneSet.txt
decode/inst/extdata/Expression_data_1400genes.txt
decode/inst/extdata/Expression_data_50genes.txt
decode/inst/doc
decode/inst/doc/v.R
decode/inst/doc/v.html
decode/inst/doc/v.Rmd
decode/NAMESPACE
decode/R
decode/R/sumResult_MinGain.r
decode/R/getBonferroniPValue.r
decode/R/getPathway.r
decode/R/openFileToWrite.r
decode/R/getAssoGeneSetPValue.r
decode/R/getPartitionIndex.r
decode/R/getFDR.r
decode/R/Decode.r
decode/R/getBestAssociatedGeneSet.r
decode/R/getDE_DC_OptimalThreshold.r
decode/vignettes
decode/vignettes/v.Rmd
decode/MD5
decode/build
decode/build/vignette.rds
decode/DESCRIPTION
decode/man
decode/man/getPathway.Rd decode/man/runDecode.Rd decode/man/getBonferroniPValue.Rd decode/man/getBestAssociatedGeneSet.Rd decode/man/openFileToWrite.Rd decode/man/sumResult_MinGain.Rd decode/man/getDE_DC_OptimalThreshold.Rd decode/man/getPartitionIndex.Rd decode/man/getFDR.Rd decode/man/getAssoGeneSetPValue.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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All documentation is copyright its authors; we didn't write any of that.