Man pages for decode
Differential Co-Expression and Differential Expression Analysis

getAssoGeneSetPValueCalculate the p-value between selected genes and functional...
getBestAssociatedGeneSetGet best associated functional gene sets for partitions of...
getBonferroniPValueAdjust p-value by Bonferroni correction
getDE_DC_OptimalThresholdPerform chi-square optimization
getFDRAdjust p-value by Benjamini and Hochberg method
getPartitionIndexGet gene index of 8 partitions for gene i
getPathwayread functional gene sets
openFileToWriteOpen file to write result
runDecodeDifferential Co-Expression and Differential Expression...
sumResult_MinGainSummarize the functional gene set results into text file
decode documentation built on May 30, 2017, 3 a.m.