Man pages for decode
Differential Co-Expression and Differential Expression Analysis
| getAssoGeneSetPValue | Calculate the p-value between selected genes and functional... |
| getBestAssociatedGeneSet | Get best associated functional gene sets for partitions of... |
| getBonferroniPValue | Adjust p-value by Bonferroni correction |
| getDE_DC_OptimalThreshold | Perform chi-square optimization |
| getFDR | Adjust p-value by Benjamini and Hochberg method |
| getPartitionIndex | Get gene index of 8 partitions for gene i |
| getPathway | read functional gene sets |
| openFileToWrite | Open file to write result |
| runDecode | Differential Co-Expression and Differential Expression... |
| sumResult_MinGain | Summarize the functional gene set results into text file |
