Man pages for delimtools
Helper Functions for Species Delimitation Analysis
| abgd_tbl | A Command-Line Interface for ABGD - Automatic Barcode Gap... |
| asap_tbl | A Command-Line Interface for ASAP - Assemble Species by... |
| as_dwc | Rename Columns using Darwin Core Standard Terms |
| bgmyc_tbl | Turns bGMYC Results Into a Tibble |
| boot_dna | Boostrapping DNA sequences |
| check_delim | Checks If Two or More Species Delimitation Outputs are... |
| check_identifiers | Checks for Differences Between Identifiers in Metadata and... |
| clean_dna | Removes Gaps, Ambiguities and Missing Data from DNA Sequences |
| collapse_others | Summarise Haplotype Metadata Down to One Row |
| confidence_intervals | Confidence Intervals for Species Delimitations Methods |
| delim_autoplot | Plot Phylogenetic Trees With Species Delimitation Partitions |
| delim_autoplot2 | Plot Phylogenetic Trees With Species Delimitation Partitions |
| delim_brewer | Customize Delimitation Colors |
| delim_consensus | Estimate a Majority-Vote Consensus |
| delim_join | Join Multiple Species Delimitation Methods Outputs |
| delimtools-package | Helper Functions for Species Delimitation Analysis |
| drop_sequences | Remove Sequences of a DNAbin list object |
| dwc_terms | Print Darwin Core Terms, Definitions and Examples as Bullet... |
| geophagus | Cytochrome C Oxidase Sequences of Geophagus Eartheaters |
| geophagus_beast | Geophagus Eartheaters Ultrametric Tree |
| geophagus_bootstraps | Geophagus Eartheaters Bootstrap Trees |
| geophagus_delims | Geophagus Eartheaters Species Partitions |
| geophagus_info | Geophagus Earthearts Associated Metadata |
| geophagus_posterior | Geophagus Eartheaters Posterior Trees |
| geophagus_raxml | Geophagus Eartheaters Phylogram |
| get_delim_cols | Extract Labels and Colors from Species Delimitation... |
| get_dwc | Get Darwin Core Terms and Definitions |
| gmyc_tbl | Turns GMYC Results Into a Tibble |
| hap_collapse | Removes Duplicated Sequences from Alignment |
| haplotype_tbl | Summarise Haplotypes Down to One Row |
| hap_unite | Unite Haplotype Summaries with Species Delimitation Outputs |
| locmin_tbl | Turns Local Minima Results into a Tibble |
| match_ratio | Compute Agreement Between Alternative Species Delimitation... |
| min_brlen | A function to report the smallest tip-to-tip distances in a... |
| morph_tbl | Generating a Morphological Delimitation Table |
| mptp_tbl | A Command-Line Interface for mPTP - multi-rate Poisson Tree... |
| report_delim | Report Unique Species Partitions |
