collapse_others: Summarise Haplotype Metadata Down to One Row

In delimtools: Helper Functions for Species Delimitation Analysis

Summarise Haplotype Metadata Down to One Row

Description

collapse_others() returns a tbl_df summarising all unique haplotype frequencies, duplicates and selected metadata into a single row.

Usage

collapse_others(data, hap_tbl, labels, cols)

Arguments

data	An object of class tbl_df containing sequence metadata.
hap_tbl	Output from haplotype_tbl.
labels	Column name which contains sequence names.
cols	A character vector of variables to collapse.

Details

collapse_others() is a helper function to summarise metadata along with haplotype_tbl. For any given cols, collapse_others() flattens its content by unique haplotypes and its duplicates in hap_tbl.

Value

an object of class tbl_df.

Author(s)

Pedro S. Bittencourt, Rupert A. Collins.

Examples

# summarise haplotypes
hap_tbl <- haplotype_tbl(geophagus)

# summarise country
others_df <- collapse_others(geophagus_info, hap_tbl, "gbAccession", "country")

delimtools documentation built on April 3, 2025, 9:28 p.m.