as_dwc: Rename Columns using Darwin Core Standard Terms

In delimtools: Helper Functions for Species Delimitation Analysis

Rename Columns using Darwin Core Standard Terms

Description

as_dwc() rename columns in a tbl_df using a vector of terms defined by Darwin Core Standard.

Usage

as_dwc(dwc, data, terms)

Arguments

dwc	a list of standard terms and definitions created using get_dwc().
data	a tbl_df.
terms	a vector or list of terms to be used as replacement.

Details

as_dwc() will replace current column names by the ones defined in terms. For each column in data, Darwin Core equivalent terms must be informed in the same order by the user. If terms and column names do not match in length or if terms used are not found in Darwin Core standard, an error will be printed on Console.

Value

an object of class tbl_df.

Author(s)

Pedro S. Bittencourt, Rupert A. Collins.

Examples

# get dwc terms and definitions
dwc <- get_dwc(type = "simple")

# create a data frame with sample metadata
my_df <- tibble::tibble(
  species = c("sp1", "sp2", "sp3"),
  location = c("loc1", "loc2", "loc3"),
  voucher = c("M01", "M02", "M03"),
  collector = c("John", "Robert", "David")
)

# rename columns
as_dwc(dwc, my_df, terms = c("scientificName", "locality", "catalogNumber", "recordedBy"))

delimtools documentation built on April 3, 2025, 9:28 p.m.