Description Usage Arguments Details Value Author(s) References Examples

Set control parameters for the EM algorithm.

1 2 3 4 | ```
em.control(maxit = 500, tol = 1e-08, crit = c("relative","absolute"),
random.start = TRUE, classification = c("soft","hard"))
``` |

`maxit` |
The maximum number of iterations. |

`tol` |
The tolerance level for convergence. See Details. |

`crit` |
Sets the convergence criterion to "relative" or "absolute" change of the log-likelihood. See Details. |

`random.start` |
This is used for a (limited) random initialization of the parameters. See Details. |

`classification` |
Type of classification to states used. See Details. |

The argument `crit`

sets the convergence criterion to either the
relative change in the log-likelihood or the absolute change in the
log-likelihood. The relative likelihood criterion (the default) assumes
convergence on iteration *i* when
* (log L(i) - log L(i-1))/(log L(i-1)) < tol*.
The absolute likelihood criterion assumes convergence on iteration
*i* when *(log L(i) - log L(i-1)) < tol*.
Use `crit="absolute"`

to invoke the latter
convergence criterion. Note that in that case, optimal values of the
tolerance parameter `tol`

scale with the value of the log-likelihood
(and these are not changed automagically).

Argument `random.start`

This is used for a (limited) random
initialization of the parameters. In particular, if
`random.start=TRUE`

, the (posterior) state probabilities are
randomized at iteration 0 (using a uniform distribution), i.e. the
*γ* variables (Rabiner, 1989) are sampled from the Dirichlet
distribution with a (currently fixed) value of
*α=0.1*; this results in values for each row of *γ*
that are quite close to zero and one; note that when these values are
chosen at zero and one, the initialization is similar to that used in
`kmeans`

. Random initialization is useful when no initial parameters can be
given to distinguish between the states. It is also useful for repeated
estimation from different starting values.

Argument `classification`

is used to choose either soft (default) or
hard classification of observations to states. When using soft classification, observations
are assigned to states with a weight equal to the posterior probability of
the state. When using hard classification, observations are assigned to states
according to the maximum a posteriori (MAP) states (i.e., each observation
is assigned to one state, which is determined by the Viterbi algorithm in the
case of `depmix`

models). As a result, the EM algorithm will find a local
maximum of the classification likelihood (Celeux & Govaert, 1992).
Warning: hard classification is an experimental feature,
especially for hidden Markov models, and its use is currently not advised.

`em.control`

returns a list of the control parameters.

Ingmar Visser & Maarten Speekenbrink

Lawrence R. Rabiner (1989). A tutorial on hidden Markov models and
selected applications in speech recognition. *Proceedings of
IEEE*, 77-2, p. 267-295.

Gilles Celeux and Gerard Govaert (1992). A classification EM algorithm
for clustering and two stochastic versions. *Computational
Statistics and Data Analysis, 14*, p. 315-332.

1 2 3 4 5 6 7 8 9 10 11 | ```
# using "hard" assignment of observations to the states, we can maximise the
# classification likelihood instead of the usual marginal likelihood
data(speed)
mod <- depmix(list(rt~1,corr~1),data=speed,nstates=2,
family=list(gaussian(),multinomial("identity")),ntimes=c(168,134,137))
set.seed(1)
# fit the model by calling fit
fmod <- fit(mod,emcontrol=em.control(classification="hard"))
# can get rather different solutions with different starting values...
set.seed(3)
fmod2 <- fit(mod,emcontrol=em.control(classification="hard"))
``` |

depmixS4 documentation built on May 30, 2017, 6:48 a.m.

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