detzrcr: Compare Detrital Zircon Suites

Compare detrital zircon suites by uploading univariate, U-Pb age, or bivariate, U-Pb age and Lu-Hf data, in a 'shiny'-based user-interface. Outputs publication quality figures using 'ggplot2', and tables of statistics currently in use in the detrital zircon geochronology community.

AuthorMagnus Kristoffersen [aut, cre]
Date of publication2017-02-23 23:42:38
MaintainerMagnus Kristoffersen <magnus.kristoffersen@geo.uio.no>
LicenseGPL-3
Version0.1.3
https://github.com/magnuskristoffersen/detzrcr

View on CRAN

Man pages

calc_dens: Calculate 1D density of age data

calc_dens_hist: Calculate scaled 1d density

calc_dkw: Dvoretzky-Kiefer-Wolfowitz inequality

calc_hf: Calculate hafnium values.

calc_o_param: Calculate 1-O

calc_quantiles: Calculate quantiles

check_conc: Check concordancy of input ages

combine_matrices: Combine two square matrices

dzr_mix: Calculate mixing model

find_plot_max: Find maximum value for plotting.

find_plot_min: Find minimum value for plotting

find_plot_min_max: Wrapper function for 'find_plot_min' and 'find_plot_max'

hfhf_chur: 176Hf/177Hf value of CHUR.

hfhf_dm: 176Lu/177Hf value of DM.

hf_lines: Produce CHUR and DM lines

lambda_lu: Decay constant of 176Lu.

lambda_u235: Decay constants of 235U.

lambda_u238: Decay constants of 238U.

luhf_chur: 176Lu/177Hf value of CHUR.

luhf_dm: 176Lu/177Hf value of DM.

luhf_zrc: 176Lu/177Hf value of average continental crust.

make_tiling: Produce data.frame of 1-O matrix suitable for geom_tile

Natal_group: Dataset Natal group

o_param_matrix_age: Populate matrix with age 1-O

o_param_matrix_tdm: Populate matrix with model age 1-O

plot_axis_lim: Axes limits for ggplot2

plot_bw_theme: Stripped down theme for ggplot2

plot_dens: Plot 1d density

plot_dens_hist: Plot 1d density with histogram

plot_ecdf: Plot ecdf

plot_hf: Plot Lu-Hf data

plot_labels: Labels for ggplot2 plots

plot_point_scale: Add manual shape scale to scatter plot

plot_quantiles: Plot quantiles

plot_text_options: Modify text options of plots

plot_tile: Tile plot of 1-O matrix

populate_matrix: Populate matrix

quant_bounds: Calculate confidence bands for lower and upper quartile

run_detzrcr: Launch shiny interface

satkoski_1d: Calculate 1d likeness of detrital zircon populations

satkoski_1d_matrix: Pairwise Satkoski likeness

satkoski_2d: Calculate 2d (age and Lu-Hf) likeness of detrital zircon...

satkoski_2d_matrix: Pairwise 2d Satkoski likeness

tile_func: Ready 1-O matrix for tile plot

tiling: Apply tile_func to vector

u238_u235_ratio: Atomic ratio of 238U and 235U.

Functions

calc_dens Man page
calc_dens_hist Man page
calc_dkw Man page
calc_hf Man page
calc_o_param Man page
calc_quantiles Man page
check_conc Man page
combine_matrices Man page
dzr_mix Man page
find_plot_max Man page
find_plot_min Man page
find_plot_min_max Man page
hfhf_chur Man page
hfhf_dm Man page
hf_lines Man page
lambda_lu Man page
lambda_u235 Man page
lambda_u238 Man page
luhf_chur Man page
luhf_dm Man page
luhf_zrc Man page
make_tiling Man page
Natal_group Man page
o_param_matrix_age Man page
o_param_matrix_tdm Man page
plot_axis_lim Man page
plot_bw_theme Man page
plot_dens Man page
plot_dens_hist Man page
plot_ecdf Man page
plot_hf Man page
plot_labels Man page
plot_point_scale Man page
plot_quantiles Man page
plot_text_options Man page
plot_tile Man page
populate_matrix Man page
quant_bounds Man page
run_detzrcr Man page
satkoski_1d Man page
satkoski_1d_matrix Man page
satkoski_2d Man page
satkoski_2d_matrix Man page
tile_func Man page
tiling Man page
u238_u235_ratio Man page

Files

detzrcr
detzrcr/inst
detzrcr/inst/CITATION
detzrcr/inst/shiny-apps
detzrcr/inst/shiny-apps/detzrcr_app
detzrcr/inst/shiny-apps/detzrcr_app/app.R
detzrcr/inst/extdata
detzrcr/inst/extdata/Natal_group.csv
detzrcr/inst/doc
detzrcr/inst/doc/detzrcr-vignette.Rmd
detzrcr/inst/doc/detzrcr-vignette.R
detzrcr/inst/doc/detzrcr-vignette.html
detzrcr/NAMESPACE
detzrcr/NEWS.md
detzrcr/R
detzrcr/R/calculations.R detzrcr/R/plotting.R detzrcr/R/extdata.R detzrcr/R/run_detzrcr.R detzrcr/R/constants.R
detzrcr/vignettes
detzrcr/vignettes/karoo.csv
detzrcr/vignettes/uqlq.png
detzrcr/vignettes/detzrcr.sty
detzrcr/vignettes/detzrcr-vignette.Rmd
detzrcr/vignettes/oplot.png
detzrcr/vignettes/kde.png
detzrcr/vignettes/data_input.png
detzrcr/vignettes/1-o.png
detzrcr/README.md
detzrcr/MD5
detzrcr/build
detzrcr/build/vignette.rds
detzrcr/DESCRIPTION
detzrcr/man
detzrcr/man/tiling.Rd detzrcr/man/hf_lines.Rd detzrcr/man/plot_bw_theme.Rd detzrcr/man/find_plot_max.Rd detzrcr/man/plot_tile.Rd detzrcr/man/plot_quantiles.Rd detzrcr/man/Natal_group.Rd detzrcr/man/calc_dkw.Rd detzrcr/man/populate_matrix.Rd detzrcr/man/hfhf_chur.Rd detzrcr/man/plot_dens.Rd detzrcr/man/calc_dens_hist.Rd detzrcr/man/lambda_u235.Rd detzrcr/man/combine_matrices.Rd detzrcr/man/satkoski_1d_matrix.Rd detzrcr/man/hfhf_dm.Rd detzrcr/man/find_plot_min_max.Rd detzrcr/man/plot_text_options.Rd detzrcr/man/satkoski_2d_matrix.Rd detzrcr/man/plot_point_scale.Rd detzrcr/man/plot_labels.Rd detzrcr/man/calc_o_param.Rd detzrcr/man/o_param_matrix_age.Rd detzrcr/man/check_conc.Rd detzrcr/man/plot_dens_hist.Rd detzrcr/man/luhf_dm.Rd detzrcr/man/luhf_chur.Rd detzrcr/man/make_tiling.Rd detzrcr/man/satkoski_2d.Rd detzrcr/man/plot_hf.Rd detzrcr/man/plot_ecdf.Rd detzrcr/man/dzr_mix.Rd detzrcr/man/calc_quantiles.Rd detzrcr/man/calc_dens.Rd detzrcr/man/u238_u235_ratio.Rd detzrcr/man/find_plot_min.Rd detzrcr/man/luhf_zrc.Rd detzrcr/man/o_param_matrix_tdm.Rd detzrcr/man/run_detzrcr.Rd detzrcr/man/lambda_lu.Rd detzrcr/man/satkoski_1d.Rd detzrcr/man/calc_hf.Rd detzrcr/man/plot_axis_lim.Rd detzrcr/man/quant_bounds.Rd detzrcr/man/lambda_u238.Rd detzrcr/man/tile_func.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.