dhga: Differential Hub Gene Analysis
Version 0.1

Identification of hub genes in a gene co-expression network from gene expression data. The differential network analysis for two contrasting conditions leads to the identification of various types of hubs like Housekeeping, Unique to stress (Disease) and Unique to control (Normal) hub genes.

AuthorSamarendra Das <samarendra4849@gmail.com> and Baidya Nath Mandal <mandal.stat@gmail.com>
Date of publication2016-09-06 08:12:54
MaintainerSamarendra Das <samarendra4849@gmail.com>
LicenseGPL (>= 2)
Version0.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("dhga")

Popular man pages

HubPlot: Venn plot of hub genes under two conditions namely stress and...
hub.pval.cutoff: Identification of hub genes in a Gene Co-expression Network...
HubStatus: Hub status of the genes in a gene co-expression network
hub.wgs: Identification of hub genes in a Gene Co-expression Network...
pvalue.hub: Compuation of gene connection sigificance values in a Gene...
rice_salt: The gene expression data of rice under salinity stress...
WeightedGeneScore: Computation of weighted gene score of genes in Gene...
See all...

All man pages Function index File listing

Man pages

Adjacency: Construction of Gene Co-expression Network
DiffHub: Differential Hub status of the genes in a gene co-expression...
HubPlot: Venn plot of hub genes under two conditions namely stress and...
hub.pval.cutoff: Identification of hub genes in a Gene Co-expression Network...
HubStatus: Hub status of the genes in a gene co-expression network
hub.wgs: Identification of hub genes in a Gene Co-expression Network...
pvalue.hub: Compuation of gene connection sigificance values in a Gene...
rice_normal: The gene expression data of rice under control or normal...
rice_salt: The gene expression data of rice under salinity stress...
WeightedGeneScore: Computation of weighted gene score of genes in Gene...

Functions

Files

NAMESPACE
data
data/rice_salt.rda
data/rice_normal.rda
R
R/dhga.R
MD5
DESCRIPTION
man
man/Adjacency.Rd
man/DiffHub.Rd
man/WeightedGeneScore.Rd
man/rice_salt.Rd
man/HubPlot.Rd
man/hub.pval.cutoff.Rd
man/HubStatus.Rd
man/rice_normal.Rd
man/hub.wgs.Rd
man/pvalue.hub.Rd
dhga documentation built on May 20, 2017, 3:12 a.m.

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