dhga: Differential Hub Gene Analysis

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Identification of hub genes in a gene co-expression network from gene expression data. The differential network analysis for two contrasting conditions leads to the identification of various types of hubs like Housekeeping, Unique to stress (Disease) and Unique to control (Normal) hub genes.

Author
Samarendra Das <samarendra4849@gmail.com> and Baidya Nath Mandal <mandal.stat@gmail.com>
Date of publication
2016-09-06 08:12:54
Maintainer
Samarendra Das <samarendra4849@gmail.com>
License
GPL (>= 2)
Version
0.1

View on CRAN

Man pages

Adjacency
Construction of Gene Co-expression Network
DiffHub
Differential Hub status of the genes in a gene co-expression...
HubPlot
Venn plot of hub genes under two conditions namely stress and...
hub.pval.cutoff
Identification of hub genes in a Gene Co-expression Network...
HubStatus
Hub status of the genes in a gene co-expression network
hub.wgs
Identification of hub genes in a Gene Co-expression Network...
pvalue.hub
Compuation of gene connection sigificance values in a Gene...
rice_normal
The gene expression data of rice under control or normal...
rice_salt
The gene expression data of rice under salinity stress...
WeightedGeneScore
Computation of weighted gene score of genes in Gene...

Files in this package

dhga
dhga/NAMESPACE
dhga/data
dhga/data/rice_salt.rda
dhga/data/rice_normal.rda
dhga/R
dhga/R/dhga.R
dhga/MD5
dhga/DESCRIPTION
dhga/man
dhga/man/Adjacency.Rd
dhga/man/DiffHub.Rd
dhga/man/WeightedGeneScore.Rd
dhga/man/rice_salt.Rd
dhga/man/HubPlot.Rd
dhga/man/hub.pval.cutoff.Rd
dhga/man/HubStatus.Rd
dhga/man/rice_normal.Rd
dhga/man/hub.wgs.Rd
dhga/man/pvalue.hub.Rd