HubStatus: Hub status of the genes in a gene co-expression network
In dhga: Differential Hub Gene Analysis
Description
Usage
Arguments
Value
Author(s)
Examples
Description
The function returns hub status of each gene in a gene co-expression network (GCN)
Usage
1
HubStatus(pvalue.stress, pvalue.control, alpha)
Arguments
pvalue.stress
pvalue.stress is a vector of p-values for genes in the GCN under stress condition. pvalue.stress can be obtained from the output of hub.stress function.
pvalue.control
pvalue.control is a vector of p-values for genes in the GCN under normal or control condition. pvalue.control can be obtained from the output of hub.control function.
alpha
alpha is a scalar representing statistical level of significance. Default is alpha=0.0001
Value
The function returns a list with two components. First component returns the list of genes along with their hub status. Second component gives a table containing number of genes under different categories of hubs viz. housekeeping, unique to stress and unique to normal
Author(s)
Samarendra Das and Baidya Nath Mandal
Examples
1
2
3
4
5
6
7
8
data(rice_salt)
pval.stres <- pvalue.hub(rice_salt, beta=6, m=18, s=80, plot=FALSE)
p1 <- pval.stres[, 2]
data(rice_normal)
pval.control <- pvalue.hub(rice_normal, beta=6, m=18, s=80, plot=FALSE)
p2 <- pval.control[, 2]
HubStatus(p1,p2,alpha=0.0001)
Example output
Loading required package: VennDiagram
Loading required package: grid
Loading required package: futile.logger
$hub.status
Genes Hub Status
1 Os.9805.1.S1_at Not Hub
2 Os.8149.1.S1_at Not Hub
3 Os.51343.1.S1_at Housekeeping Hub
4 Os.2881.1.S1_at Not Hub
5 Os.55524.1.S1_at Housekeeping Hub
6 Os.22029.1.S1_a_at Housekeeping Hub
7 OsAffx.3191.1.A1_at Not Hub
8 OsAffx.12383.1.S1_at Housekeeping Hub
9 Os.52157.1.S1_x_at Unique Hub to Stress
10 Os.26770.2.S1_x_at Housekeeping Hub
11 Os.5140.1.S1_at Not Hub
12 Os.2128.1.S1_at Unique Hub to Normal
13 Os.25613.1.A1_at Housekeeping Hub
14 Os.32686.1.S1_at Not Hub
15 OsAffx.27459.3.S1_at Housekeeping Hub
16 Os.10487.1.S1_at Not Hub
17 Os.31191.1.S1_at Housekeeping Hub
18 Os.53177.1.S1_at Not Hub
19 Os.40338.1.S1_at Unique Hub to Normal
20 Os.31171.1.S1_at Unique Hub to Normal
21 OsAffx.25039.1.S1_at Housekeeping Hub
22 OsAffx.12783.1.S1_at Housekeeping Hub
23 Os.47413.1.S1_at Housekeeping Hub
24 Os.38638.4.S1_s_at Unique Hub to Stress
25 Os.4819.1.A1_s_at Housekeeping Hub
26 Os.33971.1.S1_at Unique Hub to Stress
27 Os.18955.1.S1_at Unique Hub to Stress
28 Os.30269.1.S1_at Not Hub
29 Os.38812.1.S1_at Not Hub
30 Os.49650.1.S1_at Not Hub
31 OsAffx.27459.3.S1_x_at Housekeeping Hub
32 OsAffx.28409.1.S1_at Housekeeping Hub
33 Os.11151.1.S1_a_at Not Hub
34 Os.26511.1.S1_at Not Hub
35 Os.41199.1.A1_at Not Hub
36 Os.40007.1.S1_x_at Unique Hub to Stress
37 Os.10389.1.S1_at Housekeeping Hub
38 OsAffx.20682.1.S1_at Unique Hub to Stress
39 Os.11272.1.S1_at Housekeeping Hub
40 Os.9445.1.S1_at Not Hub
41 Os.48215.1.A1_at Unique Hub to Stress
42 Os.8673.1.S1_at Not Hub
43 Os.1465.1.S1_at Not Hub
44 Os.53177.1.S1_s_at Not Hub
45 OsAffx.28409.2.S1_s_at Housekeeping Hub
46 Os.53439.1.S1_at Unique Hub to Normal
47 Os.12629.1.S1_at Housekeeping Hub
48 Os.11555.1.S1_at Housekeeping Hub
49 Os.11898.1.S1_at Not Hub
50 Os.56232.1.S1_at Unique Hub to Normal
51 OsAffx.20930.1.S1_at Not Hub
52 Os.47737.1.S1_at Unique Hub to Stress
53 OsAffx.17611.1.S1_at Unique Hub to Stress
54 Os.38638.3.S1_x_at Housekeeping Hub
55 Os.52100.1.S1_at Not Hub
56 Os.7770.1.S1_at Not Hub
57 Os.9836.1.S1_at Not Hub
58 Os.16744.1.S1_at Not Hub
59 Os.51307.1.S1_at Housekeeping Hub
60 OsAffx.26317.1.S2_at Unique Hub to Stress
61 OsAffx.2166.1.S1_at Unique Hub to Normal
62 Os.5621.1.S1_at Not Hub
63 Os.11787.1.S1_at Not Hub
64 Os.33625.4.S1_at Not Hub
65 OsAffx.31756.4.S1_at Housekeeping Hub
66 Os.50805.1.S1_at Unique Hub to Normal
67 OsAffx.29448.1.S1_at Housekeeping Hub
68 Os.11801.1.S1_at Unique Hub to Stress
69 Os.47802.1.A1_at Not Hub
70 OsAffx.18861.1.S1_at Unique Hub to Normal
71 Os.56150.1.S1_at Not Hub
72 Os.12642.1.S1_at Not Hub
73 Os.10469.1.S1_at Unique Hub to Normal
74 Os.55079.1.S1_at Unique Hub to Normal
75 Os.34174.1.S1_at Not Hub
76 OsAffx.12433.1.S1_at Housekeeping Hub
77 Os.50369.1.S1_at Not Hub
78 OsAffx.15447.1.S1_at Not Hub
79 Os.52619.1.S1_at Not Hub
80 Os.17102.1.S1_at Housekeeping Hub
81 OsAffx.30295.1.S1_at Housekeeping Hub
82 Os.11800.1.S1_s_at Not Hub
83 Os.10654.1.S1_s_at Housekeeping Hub
84 Os.54579.1.S1_s_at Housekeeping Hub
85 OsAffx.3569.1.S1_at Unique Hub to Normal
86 Os.55907.1.S1_at Housekeeping Hub
87 Os.52058.1.S1_at Not Hub
88 Os.57456.1.S1_x_at Unique Hub to Stress
89 Os.155.1.S1_a_at Unique Hub to Normal
90 Os.6345.1.S1_at Not Hub
91 Os.11677.1.S1_x_at Housekeeping Hub
92 OsAffx.8061.1.S1_at Not Hub
93 OsAffx.13662.1.S1_at Not Hub
94 Os.15199.1.S1_at Not Hub
95 Os.31778.2.S1_x_at Housekeeping Hub
96 Os.39994.1.S1_at Not Hub
97 Os.50372.1.S1_at Not Hub
98 Os.18381.1.S1_at Not Hub
99 Os.11796.1.S1_at Not Hub
100 OsAffx.19632.1.S1_at Housekeeping Hub
101 Os.12767.1.S1_a_at Unique Hub to Normal
102 Os.34061.1.S1_a_at Not Hub
103 Os.12239.1.S1_at Not Hub
104 Os.49780.1.S1_x_at Unique Hub to Stress
105 OsAffx.7332.1.S1_at Housekeeping Hub
106 Os.36162.1.S1_s_at Unique Hub to Normal
107 Os.44475.1.S1_at Not Hub
108 Os.54555.1.S1_at Housekeeping Hub
109 Os.15247.1.S1_s_at Not Hub
110 Os.6683.1.S1_at Unique Hub to Normal
111 Os.56924.1.S1_at Housekeeping Hub
112 OsAffx.15530.1.S1_at Housekeeping Hub
113 Os.50290.1.S1_at Housekeeping Hub
114 Os.57362.1.S1_at Not Hub
115 Os.50883.1.S1_at Housekeeping Hub
116 Os.12286.1.S1_at Not Hub
117 Os.52536.1.S1_at Not Hub
118 Os.6792.1.S1_at Housekeeping Hub
119 Os.319.1.A1_at Not Hub
120 Os.18933.1.S1_at Not Hub
121 Os.4760.1.S1_at Unique Hub to Normal
122 OsAffx.30721.5.S1_at Not Hub
123 OsAffx.15125.1.S1_at Not Hub
124 Os.26802.1.S1_at Not Hub
125 Os.11786.2.S1_at Unique Hub to Normal
126 Os.47413.1.S1_x_at Housekeeping Hub
127 Os.24906.1.S1_at Not Hub
128 Os.4715.1.S1_at Not Hub
129 Os.534.2.S1_x_at Housekeeping Hub
130 Os.8118.1.S1_at Housekeeping Hub
131 Os.21319.1.S1_at Unique Hub to Normal
132 Os.23183.1.S1_at Unique Hub to Stress
133 Os.27659.1.S1_x_at Not Hub
134 Os.23381.1.A1_at Not Hub
135 Os.27759.1.S1_at Not Hub
136 OsAffx.7934.1.S1_at Housekeeping Hub
137 Os.54672.1.S1_at Housekeeping Hub
138 Os.15471.1.S1_at Unique Hub to Normal
139 Os.31778.2.S1_at Housekeeping Hub
140 Os.17652.1.S1_s_at Unique Hub to Normal
141 OsAffx.11963.1.S1_at Unique Hub to Normal
142 OsAffx.27299.1.S1_at Not Hub
143 Os.5197.2.S1_x_at Housekeeping Hub
144 Os.54653.1.S1_at Housekeeping Hub
145 Os.16558.1.S1_at Unique Hub to Normal
146 Os.35154.1.S1_x_at Housekeeping Hub
147 Os.54178.1.S1_at Housekeeping Hub
148 Os.46710.2.S1_at Not Hub
149 Os.54318.1.S1_at Housekeeping Hub
150 OsAffx.13338.1.S1_at Housekeeping Hub
151 Os.46869.1.A1_at Unique Hub to Normal
152 Os.44475.1.S1_x_at Unique Hub to Normal
153 Os.17997.1.S1_at Unique Hub to Normal
154 Os.32964.1.S1_at Not Hub
155 Os.49294.1.S1_at Unique Hub to Stress
156 Os.26171.1.S1_at Not Hub
157 Os.50450.1.S1_at Not Hub
158 OsAffx.19332.1.S1_at Unique Hub to Stress
159 OsAffx.28727.1.S1_at Housekeeping Hub
160 Os.16904.1.S1_at Not Hub
161 Os.6825.1.S1_at Not Hub
162 OsAffx.3504.1.S1_at Not Hub
163 Os.4415.1.S1_at Housekeeping Hub
164 Os.11834.1.S1_at Not Hub
165 Os.37255.1.A1_at Not Hub
166 Os.7674.1.S1_at Not Hub
167 Os.56048.1.S1_s_at Housekeeping Hub
168 OsAffx.15785.1.S1_at Not Hub
169 Os.27624.1.S1_at Unique Hub to Stress
170 OsAffx.29866.1.S1_at Unique Hub to Stress
171 OsAffx.3569.1.S1_x_at Unique Hub to Normal
172 Os.6318.1.S1_at Not Hub
173 OsAffx.27557.1.S1_at Housekeeping Hub
174 Os.1479.1.S1_at Unique Hub to Normal
175 OsAffx.24515.1.S1_at Housekeeping Hub
176 Os.51295.1.S1_at Not Hub
177 Os.11255.1.S1_at Housekeeping Hub
178 OsAffx.31756.4.S1_x_at Housekeeping Hub
179 Os.49226.1.S1_at Unique Hub to Normal
180 OsAffx.17724.1.S1_at Not Hub
181 OsAffx.3755.1.S1_at Not Hub
182 Os.18664.1.S1_a_at Not Hub
183 Os.33087.1.S1_at Unique Hub to Stress
184 Os.54146.1.S1_at Housekeeping Hub
185 Os.11312.1.S1_s_at Unique Hub to Stress
186 OsAffx.4923.1.S1_at Not Hub
187 OsAffx.29954.1.S1_at Housekeeping Hub
188 OsAffx.27508.10.S1_s_at Not Hub
189 Os.64.1.S1_at Unique Hub to Stress
190 OsAffx.30868.1.S1_at Housekeeping Hub
191 Os.12986.1.S1_at Unique Hub to Normal
192 Os.52151.1.S1_at Unique Hub to Normal
193 OsAffx.31107.1.S1_at Not Hub
194 Os.51491.1.S1_at Not Hub
195 Os.11144.1.S1_at Unique Hub to Stress
196 Os.11308.1.S1_at Unique Hub to Stress
197 Os.40000.1.S1_at Housekeeping Hub
198 Os.11251.1.S1_at Housekeeping Hub
199 Os.5510.1.S1_at Not Hub
200 Os.18830.1.S1_at Not Hub
$out1
Housekeeping Hub Not Hub Unique Hub to Normal
63 84 30
Unique Hub to Stress
23
attr(,"class")
[1] "HubStatus_Genes" "HubStatus_Matrix"
dhga documentation built on May 2, 2019, 2:13 p.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
The function returns hub status of each gene in a gene co-expression network (GCN)
Usage
1 | HubStatus(pvalue.stress, pvalue.control, alpha)
|
Arguments
pvalue.stress |
pvalue.stress is a vector of p-values for genes in the GCN under stress condition. pvalue.stress can be obtained from the output of hub.stress function. |
pvalue.control |
pvalue.control is a vector of p-values for genes in the GCN under normal or control condition. pvalue.control can be obtained from the output of hub.control function. |
alpha |
alpha is a scalar representing statistical level of significance. Default is alpha=0.0001 |
Value
The function returns a list with two components. First component returns the list of genes along with their hub status. Second component gives a table containing number of genes under different categories of hubs viz. housekeeping, unique to stress and unique to normal
Author(s)
Samarendra Das and Baidya Nath Mandal
Examples
1 2 3 4 5 6 7 8 | data(rice_salt)
pval.stres <- pvalue.hub(rice_salt, beta=6, m=18, s=80, plot=FALSE)
p1 <- pval.stres[, 2]
data(rice_normal)
pval.control <- pvalue.hub(rice_normal, beta=6, m=18, s=80, plot=FALSE)
p2 <- pval.control[, 2]
HubStatus(p1,p2,alpha=0.0001)
|
Example output
Loading required package: VennDiagram
Loading required package: grid
Loading required package: futile.logger
$hub.status
Genes Hub Status
1 Os.9805.1.S1_at Not Hub
2 Os.8149.1.S1_at Not Hub
3 Os.51343.1.S1_at Housekeeping Hub
4 Os.2881.1.S1_at Not Hub
5 Os.55524.1.S1_at Housekeeping Hub
6 Os.22029.1.S1_a_at Housekeeping Hub
7 OsAffx.3191.1.A1_at Not Hub
8 OsAffx.12383.1.S1_at Housekeeping Hub
9 Os.52157.1.S1_x_at Unique Hub to Stress
10 Os.26770.2.S1_x_at Housekeeping Hub
11 Os.5140.1.S1_at Not Hub
12 Os.2128.1.S1_at Unique Hub to Normal
13 Os.25613.1.A1_at Housekeeping Hub
14 Os.32686.1.S1_at Not Hub
15 OsAffx.27459.3.S1_at Housekeeping Hub
16 Os.10487.1.S1_at Not Hub
17 Os.31191.1.S1_at Housekeeping Hub
18 Os.53177.1.S1_at Not Hub
19 Os.40338.1.S1_at Unique Hub to Normal
20 Os.31171.1.S1_at Unique Hub to Normal
21 OsAffx.25039.1.S1_at Housekeeping Hub
22 OsAffx.12783.1.S1_at Housekeeping Hub
23 Os.47413.1.S1_at Housekeeping Hub
24 Os.38638.4.S1_s_at Unique Hub to Stress
25 Os.4819.1.A1_s_at Housekeeping Hub
26 Os.33971.1.S1_at Unique Hub to Stress
27 Os.18955.1.S1_at Unique Hub to Stress
28 Os.30269.1.S1_at Not Hub
29 Os.38812.1.S1_at Not Hub
30 Os.49650.1.S1_at Not Hub
31 OsAffx.27459.3.S1_x_at Housekeeping Hub
32 OsAffx.28409.1.S1_at Housekeeping Hub
33 Os.11151.1.S1_a_at Not Hub
34 Os.26511.1.S1_at Not Hub
35 Os.41199.1.A1_at Not Hub
36 Os.40007.1.S1_x_at Unique Hub to Stress
37 Os.10389.1.S1_at Housekeeping Hub
38 OsAffx.20682.1.S1_at Unique Hub to Stress
39 Os.11272.1.S1_at Housekeeping Hub
40 Os.9445.1.S1_at Not Hub
41 Os.48215.1.A1_at Unique Hub to Stress
42 Os.8673.1.S1_at Not Hub
43 Os.1465.1.S1_at Not Hub
44 Os.53177.1.S1_s_at Not Hub
45 OsAffx.28409.2.S1_s_at Housekeeping Hub
46 Os.53439.1.S1_at Unique Hub to Normal
47 Os.12629.1.S1_at Housekeeping Hub
48 Os.11555.1.S1_at Housekeeping Hub
49 Os.11898.1.S1_at Not Hub
50 Os.56232.1.S1_at Unique Hub to Normal
51 OsAffx.20930.1.S1_at Not Hub
52 Os.47737.1.S1_at Unique Hub to Stress
53 OsAffx.17611.1.S1_at Unique Hub to Stress
54 Os.38638.3.S1_x_at Housekeeping Hub
55 Os.52100.1.S1_at Not Hub
56 Os.7770.1.S1_at Not Hub
57 Os.9836.1.S1_at Not Hub
58 Os.16744.1.S1_at Not Hub
59 Os.51307.1.S1_at Housekeeping Hub
60 OsAffx.26317.1.S2_at Unique Hub to Stress
61 OsAffx.2166.1.S1_at Unique Hub to Normal
62 Os.5621.1.S1_at Not Hub
63 Os.11787.1.S1_at Not Hub
64 Os.33625.4.S1_at Not Hub
65 OsAffx.31756.4.S1_at Housekeeping Hub
66 Os.50805.1.S1_at Unique Hub to Normal
67 OsAffx.29448.1.S1_at Housekeeping Hub
68 Os.11801.1.S1_at Unique Hub to Stress
69 Os.47802.1.A1_at Not Hub
70 OsAffx.18861.1.S1_at Unique Hub to Normal
71 Os.56150.1.S1_at Not Hub
72 Os.12642.1.S1_at Not Hub
73 Os.10469.1.S1_at Unique Hub to Normal
74 Os.55079.1.S1_at Unique Hub to Normal
75 Os.34174.1.S1_at Not Hub
76 OsAffx.12433.1.S1_at Housekeeping Hub
77 Os.50369.1.S1_at Not Hub
78 OsAffx.15447.1.S1_at Not Hub
79 Os.52619.1.S1_at Not Hub
80 Os.17102.1.S1_at Housekeeping Hub
81 OsAffx.30295.1.S1_at Housekeeping Hub
82 Os.11800.1.S1_s_at Not Hub
83 Os.10654.1.S1_s_at Housekeeping Hub
84 Os.54579.1.S1_s_at Housekeeping Hub
85 OsAffx.3569.1.S1_at Unique Hub to Normal
86 Os.55907.1.S1_at Housekeeping Hub
87 Os.52058.1.S1_at Not Hub
88 Os.57456.1.S1_x_at Unique Hub to Stress
89 Os.155.1.S1_a_at Unique Hub to Normal
90 Os.6345.1.S1_at Not Hub
91 Os.11677.1.S1_x_at Housekeeping Hub
92 OsAffx.8061.1.S1_at Not Hub
93 OsAffx.13662.1.S1_at Not Hub
94 Os.15199.1.S1_at Not Hub
95 Os.31778.2.S1_x_at Housekeeping Hub
96 Os.39994.1.S1_at Not Hub
97 Os.50372.1.S1_at Not Hub
98 Os.18381.1.S1_at Not Hub
99 Os.11796.1.S1_at Not Hub
100 OsAffx.19632.1.S1_at Housekeeping Hub
101 Os.12767.1.S1_a_at Unique Hub to Normal
102 Os.34061.1.S1_a_at Not Hub
103 Os.12239.1.S1_at Not Hub
104 Os.49780.1.S1_x_at Unique Hub to Stress
105 OsAffx.7332.1.S1_at Housekeeping Hub
106 Os.36162.1.S1_s_at Unique Hub to Normal
107 Os.44475.1.S1_at Not Hub
108 Os.54555.1.S1_at Housekeeping Hub
109 Os.15247.1.S1_s_at Not Hub
110 Os.6683.1.S1_at Unique Hub to Normal
111 Os.56924.1.S1_at Housekeeping Hub
112 OsAffx.15530.1.S1_at Housekeeping Hub
113 Os.50290.1.S1_at Housekeeping Hub
114 Os.57362.1.S1_at Not Hub
115 Os.50883.1.S1_at Housekeeping Hub
116 Os.12286.1.S1_at Not Hub
117 Os.52536.1.S1_at Not Hub
118 Os.6792.1.S1_at Housekeeping Hub
119 Os.319.1.A1_at Not Hub
120 Os.18933.1.S1_at Not Hub
121 Os.4760.1.S1_at Unique Hub to Normal
122 OsAffx.30721.5.S1_at Not Hub
123 OsAffx.15125.1.S1_at Not Hub
124 Os.26802.1.S1_at Not Hub
125 Os.11786.2.S1_at Unique Hub to Normal
126 Os.47413.1.S1_x_at Housekeeping Hub
127 Os.24906.1.S1_at Not Hub
128 Os.4715.1.S1_at Not Hub
129 Os.534.2.S1_x_at Housekeeping Hub
130 Os.8118.1.S1_at Housekeeping Hub
131 Os.21319.1.S1_at Unique Hub to Normal
132 Os.23183.1.S1_at Unique Hub to Stress
133 Os.27659.1.S1_x_at Not Hub
134 Os.23381.1.A1_at Not Hub
135 Os.27759.1.S1_at Not Hub
136 OsAffx.7934.1.S1_at Housekeeping Hub
137 Os.54672.1.S1_at Housekeeping Hub
138 Os.15471.1.S1_at Unique Hub to Normal
139 Os.31778.2.S1_at Housekeeping Hub
140 Os.17652.1.S1_s_at Unique Hub to Normal
141 OsAffx.11963.1.S1_at Unique Hub to Normal
142 OsAffx.27299.1.S1_at Not Hub
143 Os.5197.2.S1_x_at Housekeeping Hub
144 Os.54653.1.S1_at Housekeeping Hub
145 Os.16558.1.S1_at Unique Hub to Normal
146 Os.35154.1.S1_x_at Housekeeping Hub
147 Os.54178.1.S1_at Housekeeping Hub
148 Os.46710.2.S1_at Not Hub
149 Os.54318.1.S1_at Housekeeping Hub
150 OsAffx.13338.1.S1_at Housekeeping Hub
151 Os.46869.1.A1_at Unique Hub to Normal
152 Os.44475.1.S1_x_at Unique Hub to Normal
153 Os.17997.1.S1_at Unique Hub to Normal
154 Os.32964.1.S1_at Not Hub
155 Os.49294.1.S1_at Unique Hub to Stress
156 Os.26171.1.S1_at Not Hub
157 Os.50450.1.S1_at Not Hub
158 OsAffx.19332.1.S1_at Unique Hub to Stress
159 OsAffx.28727.1.S1_at Housekeeping Hub
160 Os.16904.1.S1_at Not Hub
161 Os.6825.1.S1_at Not Hub
162 OsAffx.3504.1.S1_at Not Hub
163 Os.4415.1.S1_at Housekeeping Hub
164 Os.11834.1.S1_at Not Hub
165 Os.37255.1.A1_at Not Hub
166 Os.7674.1.S1_at Not Hub
167 Os.56048.1.S1_s_at Housekeeping Hub
168 OsAffx.15785.1.S1_at Not Hub
169 Os.27624.1.S1_at Unique Hub to Stress
170 OsAffx.29866.1.S1_at Unique Hub to Stress
171 OsAffx.3569.1.S1_x_at Unique Hub to Normal
172 Os.6318.1.S1_at Not Hub
173 OsAffx.27557.1.S1_at Housekeeping Hub
174 Os.1479.1.S1_at Unique Hub to Normal
175 OsAffx.24515.1.S1_at Housekeeping Hub
176 Os.51295.1.S1_at Not Hub
177 Os.11255.1.S1_at Housekeeping Hub
178 OsAffx.31756.4.S1_x_at Housekeeping Hub
179 Os.49226.1.S1_at Unique Hub to Normal
180 OsAffx.17724.1.S1_at Not Hub
181 OsAffx.3755.1.S1_at Not Hub
182 Os.18664.1.S1_a_at Not Hub
183 Os.33087.1.S1_at Unique Hub to Stress
184 Os.54146.1.S1_at Housekeeping Hub
185 Os.11312.1.S1_s_at Unique Hub to Stress
186 OsAffx.4923.1.S1_at Not Hub
187 OsAffx.29954.1.S1_at Housekeeping Hub
188 OsAffx.27508.10.S1_s_at Not Hub
189 Os.64.1.S1_at Unique Hub to Stress
190 OsAffx.30868.1.S1_at Housekeeping Hub
191 Os.12986.1.S1_at Unique Hub to Normal
192 Os.52151.1.S1_at Unique Hub to Normal
193 OsAffx.31107.1.S1_at Not Hub
194 Os.51491.1.S1_at Not Hub
195 Os.11144.1.S1_at Unique Hub to Stress
196 Os.11308.1.S1_at Unique Hub to Stress
197 Os.40000.1.S1_at Housekeeping Hub
198 Os.11251.1.S1_at Housekeeping Hub
199 Os.5510.1.S1_at Not Hub
200 Os.18830.1.S1_at Not Hub
$out1
Housekeeping Hub Not Hub Unique Hub to Normal
63 84 30
Unique Hub to Stress
23
attr(,"class")
[1] "HubStatus_Genes" "HubStatus_Matrix"
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