diseasemapping: Modelling Spatial Variation in Disease Risk for Areal Data
Version 1.4.2

Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using INLA.

Browse man pages Browse package API and functions Browse package files

AuthorPatrick Brown <patrick.brown@utoronto.ca>, Lutong Zhou
Date of publication2016-09-20 13:52:19
MaintainerPatrick Brown <patrick.brown@utoronto.ca>
LicenseGPL
Version1.4.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("diseasemapping")

Man pages

bym: Fit the BYM model
cancerRates: Download cancer incidence rates from the International Agency...
casedata: Data set contains the number of cases information
diseasemapping-package: Disease Mapping
formatCases: Format the disease case data set
formatPopulation: Format a population data set
getBreaks: Age Breaks
getRates: Calculate the estimated coefficients of age and sex group...
getSMR: Calculate the standardized mortality/morbidity ratios
getStdRate: Calculate the standardized rate
inla.models: Valid models in INLA
kentucky: Larynx cancer cases and population in Kentucky
nbInlaToGraph: Write a graph file for INLA
popdata: Ontario 2006 population by census subdivision
referencepop: Standard Canadian population data set from year 1991.

Functions

aggPopLong Source code
bym Man page
bym,formula,ANY,ANY,missing-method Man page
bym,formula,ANY,missing,missing-method Man page
bym,formula,SpatialPolygonsDataFrame,NULL,character-method Man page
bym,formula,SpatialPolygonsDataFrame,missing,character-method Man page
bym,formula,SpatialPolygonsDataFrame,nb,character-method Man page
bym,formula,data.frame,nb,character-method Man page
bym-methods Man page
bym.data.frame Source code
bym.needAdjmat Source code
bym.spartan Source code
cancerRates Man page Source code
casedata Man page
diseasemapping Man page
diseasemapping-package Man page
expandCensus Source code
formatCases Man page
formatPopulation Man page
formatPopulation,SpatialPolygonsDataFrame-method Man page
formatPopulation,data.frame-method Man page
formatPopulation,list-method Man page
formatPopulation-methods Man page
getBreaks Man page Source code
getRates Man page
getSMR Man page
getSMR,SpatialPolygonsDataFrame,ANY,ANY,ANY,ANY-method Man page
getSMR,data.frame,ANY,data.frame,character,character-method Man page
getSMR,data.frame,ANY,data.frame,character,missing-method Man page
getSMR,data.frame,ANY,data.frame,missing,missing-method Man page
getSMR,data.frame,ANY,missing,character,missing-method Man page
getSMR,data.frame,ANY,missing,missing,missing-method Man page
getSMR,list,ANY,ANY,ANY,ANY-method Man page
getSMR-methods Man page
getStdRate Man page Source code
inla.models Man page Source code
kentucky Man page
kentuckyTract Man page
larynx Man page
larynxRates Man page
lcOneRow Source code
nbToInlaGraph Man page
popdata Man page
referencepop Man page
usCancer Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/bym.pdf
inst/doc/bym.Rnw
tests
tests/getSMR.R
tests/cancerRates.R
tests/bym.R
tests/getRates.R
NAMESPACE
data
data/popdata.RData
data/kentucky.RData
data/datalist
data/referencepop.RData
data/kentuckyTract.RData
data/casedata.RData
R
R/getSMR.R
R/cancerRates.R
R/bym.R
R/getBreaks.R
R/cancer-rates.info.R
R/formatPopulation.R
R/getExpected.R
R/formatCases.R
R/getRates.R
R/getStdRate.R
R/expandCensus.r
R/forInla.R
R/computeArea.r
vignettes
vignettes/Makefile
vignettes/bym.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/bym.Rd
man/cancerRates.Rd
man/diseasemapping-package.Rd
man/formatPopulation.Rd
man/getStdRate.Rd
man/referencepop.Rd
man/nbInlaToGraph.Rd
man/kentucky.Rd
man/getBreaks.Rd
man/popdata.Rd
man/getRates.Rd
man/formatCases.Rd
man/inla.models.Rd
man/casedata.Rd
man/getSMR.Rd
diseasemapping documentation built on May 19, 2017, 8:57 p.m.