diseasemapping: Modelling Spatial Variation in Disease Risk for Areal Data

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Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using INLA.

Author
Patrick Brown <patrick.brown@utoronto.ca>, Lutong Zhou
Date of publication
2016-09-20 13:52:19
Maintainer
Patrick Brown <patrick.brown@utoronto.ca>
License
GPL
Version
1.4.2

View on CRAN

Man pages

bym
Fit the BYM model
cancerRates
Download cancer incidence rates from the International Agency...
casedata
Data set contains the number of cases information
diseasemapping-package
Disease Mapping
formatCases
Format the disease case data set
formatPopulation
Format a population data set
getBreaks
Age Breaks
getRates
Calculate the estimated coefficients of age and sex group...
getSMR
Calculate the standardized mortality/morbidity ratios
getStdRate
Calculate the standardized rate
inla.models
Valid models in INLA
kentucky
Larynx cancer cases and population in Kentucky
nbInlaToGraph
Write a graph file for INLA
popdata
Ontario 2006 population by census subdivision
referencepop
Standard Canadian population data set from year 1991.

Files in this package

diseasemapping
diseasemapping/inst
diseasemapping/inst/CITATION
diseasemapping/inst/doc
diseasemapping/inst/doc/bym.pdf
diseasemapping/inst/doc/bym.Rnw
diseasemapping/tests
diseasemapping/tests/getSMR.R
diseasemapping/tests/cancerRates.R
diseasemapping/tests/bym.R
diseasemapping/tests/getRates.R
diseasemapping/NAMESPACE
diseasemapping/data
diseasemapping/data/popdata.RData
diseasemapping/data/kentucky.RData
diseasemapping/data/datalist
diseasemapping/data/referencepop.RData
diseasemapping/data/kentuckyTract.RData
diseasemapping/data/casedata.RData
diseasemapping/R
diseasemapping/R/getSMR.R
diseasemapping/R/cancerRates.R
diseasemapping/R/bym.R
diseasemapping/R/getBreaks.R
diseasemapping/R/cancer-rates.info.R
diseasemapping/R/formatPopulation.R
diseasemapping/R/getExpected.R
diseasemapping/R/formatCases.R
diseasemapping/R/getRates.R
diseasemapping/R/getStdRate.R
diseasemapping/R/expandCensus.r
diseasemapping/R/forInla.R
diseasemapping/R/computeArea.r
diseasemapping/vignettes
diseasemapping/vignettes/Makefile
diseasemapping/vignettes/bym.Rnw
diseasemapping/MD5
diseasemapping/build
diseasemapping/build/vignette.rds
diseasemapping/DESCRIPTION
diseasemapping/man
diseasemapping/man/bym.Rd
diseasemapping/man/cancerRates.Rd
diseasemapping/man/diseasemapping-package.Rd
diseasemapping/man/formatPopulation.Rd
diseasemapping/man/getStdRate.Rd
diseasemapping/man/referencepop.Rd
diseasemapping/man/nbInlaToGraph.Rd
diseasemapping/man/kentucky.Rd
diseasemapping/man/getBreaks.Rd
diseasemapping/man/popdata.Rd
diseasemapping/man/getRates.Rd
diseasemapping/man/formatCases.Rd
diseasemapping/man/inla.models.Rd
diseasemapping/man/casedata.Rd
diseasemapping/man/getSMR.Rd