Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using INLA.

Author | Patrick Brown <patrick.brown@utoronto.ca>, Lutong Zhou |

Date of publication | 2016-09-20 13:52:19 |

Maintainer | Patrick Brown <patrick.brown@utoronto.ca> |

License | GPL |

Version | 1.4.2 |

**bym:** Fit the BYM model

**cancerRates:** Download cancer incidence rates from the International Agency...

**casedata:** Data set contains the number of cases information

**diseasemapping-package:** Disease Mapping

**formatCases:** Format the disease case data set

**formatPopulation:** Format a population data set

**getBreaks:** Age Breaks

**getRates:** Calculate the estimated coefficients of age and sex group...

**getSMR:** Calculate the standardized mortality/morbidity ratios

**getStdRate:** Calculate the standardized rate

**inla.models:** Valid models in INLA

**kentucky:** Larynx cancer cases and population in Kentucky

**nbInlaToGraph:** Write a graph file for INLA

**popdata:** Ontario 2006 population by census subdivision

**referencepop:** Standard Canadian population data set from year 1991.

diseasemapping

diseasemapping/inst

diseasemapping/inst/CITATION

diseasemapping/inst/doc

diseasemapping/inst/doc/bym.pdf

diseasemapping/inst/doc/bym.Rnw

diseasemapping/tests

diseasemapping/tests/getSMR.R

diseasemapping/tests/cancerRates.R

diseasemapping/tests/bym.R

diseasemapping/tests/getRates.R

diseasemapping/NAMESPACE

diseasemapping/data

diseasemapping/data/popdata.RData

diseasemapping/data/kentucky.RData

diseasemapping/data/datalist

diseasemapping/data/referencepop.RData

diseasemapping/data/kentuckyTract.RData

diseasemapping/data/casedata.RData

diseasemapping/R

diseasemapping/R/getSMR.R
diseasemapping/R/cancerRates.R
diseasemapping/R/bym.R
diseasemapping/R/getBreaks.R
diseasemapping/R/cancer-rates.info.R
diseasemapping/R/formatPopulation.R
diseasemapping/R/getExpected.R
diseasemapping/R/formatCases.R
diseasemapping/R/getRates.R
diseasemapping/R/getStdRate.R
diseasemapping/R/expandCensus.r

diseasemapping/R/forInla.R
diseasemapping/R/computeArea.r

diseasemapping/vignettes

diseasemapping/vignettes/Makefile

diseasemapping/vignettes/bym.Rnw

diseasemapping/MD5

diseasemapping/build

diseasemapping/build/vignette.rds

diseasemapping/DESCRIPTION

diseasemapping/man

diseasemapping/man/bym.Rd
diseasemapping/man/cancerRates.Rd
diseasemapping/man/diseasemapping-package.Rd
diseasemapping/man/formatPopulation.Rd
diseasemapping/man/getStdRate.Rd
diseasemapping/man/referencepop.Rd
diseasemapping/man/nbInlaToGraph.Rd
diseasemapping/man/kentucky.Rd
diseasemapping/man/getBreaks.Rd
diseasemapping/man/popdata.Rd
diseasemapping/man/getRates.Rd
diseasemapping/man/formatCases.Rd
diseasemapping/man/inla.models.Rd
diseasemapping/man/casedata.Rd
diseasemapping/man/getSMR.Rd
Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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