diseasemapping-package | R Documentation |

Functions for calculating observed and expected counts by region, and manipulating posterior samples from Bayesian models produced by glmmBUGS.

Patrick Brown

```
# creating SMR's
data('kentucky')
kentucky = terra::unwrap(kentucky)
kentucky2 = getSMR(kentucky, larynxRates, larynx,
regionCode="County")
if(require('mapmisc', quietly=TRUE)) {
mycol = colourScale(kentucky2$SMR, breaks=9,
dec=-log10(0.5), style='equal', transform='sqrt')
plot(kentucky2, col=mycol$plot)
legendBreaks('topleft', mycol)
}
if(require("INLA", quietly=TRUE)) {
if(requireNamespace('INLA')) {
INLA::inla.setOption(num.threads=2)
# not all versions of INLA support blas.num.threads
try(INLA::inla.setOption(blas.num.threads=2), silent=TRUE)
}
kBYM = bym(observed ~ offset(logExpected) + poverty,
data= kentucky2,
prior = list(sd=c(0.1, 0.5), propSpatial=c(0.5, 0.5))
)
kBYM$par$summary
}
```

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