Man pages for disprose
Discriminating Probes Selection
| add_adapters | Add adapters to probes |
| ann.data | Chlamydia pneumoniae genome annotation. |
| annotate_probes | Annotate probes |
| blast.fill | Local BLAST results with added content. |
| blast_local | Local BLAST |
| blast.raw | Local BLAST results. |
| count_PhCh | Calculate physical and chemical properties |
| cut_probes | Cut probes |
| cut_string | Cut string into segments |
| delete_duplicates_DF | Delete rows with duplicated values |
| fill_blast_result | Complement BLAST result |
| get_GA_files | Read GISAID sequence file |
| get_GIs | Get GenInfo Identifier numbers |
| get_seq_for_DB | Get nucleotide sequences from NCBI |
| get_seq_info | Get NCBI sequence record |
| make_blast_DB | Builds local database for BLAST |
| make_ids | Create unique identification values |
| meta.all | Metadata of all available Chlamydia pneumoniae's sequences. |
| meta.target | Metadata of target Chlamydia pneumoniae's sequences. |
| normalize_DF | Normalize variable |
| rate_DF | Rate variables |
| read_and_unite_files | Read and unite files |
| read_from_table_file | Read table file |
| store_in_DB | Store data in SQLite database |
| summarize_blast_result | Summarize BLAST result |
| trim_DF | Trim data frame |
| unite_NCBI_ac.nums | Assigns master record's id to all project records |
| unite_two_DF | Combine two data frames |
