blast.fill: Local BLAST results with added content.

In disprose: Discriminating Probes Selection

Local BLAST results with added content.

Description

Result of BLAST of 5 probes against local database of target nucleotide sequences of Chlamydia pneumoniae. Local BLAST was performed with blast_local () function. Subjects' Genbank Identifiers are added with fill_blast_result () function.

Usage

blast.fill

Format

A data frame with 72 rows and 19 variables:

probe

probe sequence

probe.length

probe sequence's length

Qid

query identification number

Qstart

query start position

Qend

query end position

Rgi

subject GenInfo Identifier number

Racc

subject NCBI accession number

Rtitle

subject title

Rtaxid

subject taxon identificator

Rstart

subject start position

Rend

subject end position

alig.length

length of alignment

mismatch

amount of mismatches

gaps

amount of gaps

ident.number

amount of identical positions

score

alignment score

bitscore

alignment bitscore

Evalue

alignment e-value

Qcover

query coverage, %

disprose documentation built on March 19, 2022, 2:15 a.m.