diversitree-package: Comparative 'Phylogenetic' Analyses of Diversification

Description Author(s) References


Contains a number of comparative 'phylogenetic' methods, mostly focusing on analysing diversification and character evolution. Contains implementations of 'BiSSE' (Binary State 'Speciation' and Extinction) and its unresolved tree extensions, 'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE', 'GeoSSE', and 'BiSSE-ness' Other included methods include Markov models of discrete and continuous trait evolution and constant rate 'speciation' and extinction.


Richard G. FitzJohn [aut, cre], Emma Goldberg [aut], Karen Magnuson-Ford [aut], Roger Sidje [aut]

Maintainer: Richard G. FitzJohn <rich.fitzjohn@gmail.com>


Diversitree contains methods described in the following papers (all of which aside from Maddison et al. 2007 were originally published as a diversitree implementation).

diversitree documentation built on June 11, 2021, 5:17 p.m.