make.pgls | R Documentation |

Generate the likelihood function that underlies PGLS
(Phylogenetic Generalised Least Squares). This is a bit of a misnomer
here, as you may not be interested in least squares (e.g., if using
this with `mcmc`

for Bayesian inference).

```
make.pgls(tree, formula, data, control=list())
```

`tree` |
A bifurcating phylogenetic tree, in |

`formula` |
A model formula; see |

`data` |
A data frame containing the variables in the model. If
not found in |

`control` |
A list of control parameters. Currently the only
option is the key “method” which can be |

Richard G. FitzJohn

Freckleton R.P. 2012. Fast likelihood calculations for comparative analyses. Methods in Ecology and Evolution 3: 940-947.

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