dmm: Dyadic Mixed Model for Pedigree Data
Version 1.7-1

Dyadic mixed model analysis with multi-trait responses and pedigree-based partitioning of individual variation into a range of environmental and genetic variance components for individual and maternal effects.

AuthorNeville Jackson
Date of publication2016-04-12 08:12:28
MaintainerNeville Jackson <nanddjackson@bigpond.com>
LicenseGPL-2 | GPL (>= 2) | GPL-3
Version1.7-1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("dmm")

Getting started

Package overview

Popular man pages

chartodec: Convert a vector from character to decimal numbers
condense.dmmblockarray: Condense an object of type 'dmmblockarray' to an object of...
dmm-internal: Functions internal to dmm
gsummary.dmm: Make summary tables of genetic parameters for a dmm object
plot.dmm: Plot residuals from fitting dyadic model
print.dmm: Print method for a 'dmm()' fitted model object.
tstmo1.df: Dfreml example dataset
See all...

All man pages Function index File listing

Man pages

chartodec: Convert a vector from character to decimal numbers
condense.dmmarray: Condense an object of type 'dmmarray' to an object of type...
condense.dmmblockarray: Condense an object of type 'dmmblockarray' to an object of...
dmm: Fit a dyadic mixed model to pedigree data
dmm-internal: Functions internal to dmm
dmm-package: Dyadic mixed model analysis for pedigree data
dt8bal.df: A balanced dataset with eight individuals.
gprint: Generic function for printing genetic parameters contained in...
gprint.dmm: Print method for genetic parameters contained in an object of...
gresponse.dmm: Compute response to selection, given phenotypic selection...
gsummary.dmm: Make summary tables of genetic parameters for a dmm object
harv101.df: Harvey dataset
make.countarray: Count the number of observations in a dataframe or an 'mdf'...
make.ctable: Generates a list of vectors containing sets of variance...
make.dmmobj: Construct an object of class 'dmm' from user-supplied data
mdf: Prepare a dataframe for use with dmm function
merino.df: Australian Merino sheep research dataset
pedcheck: Checks that the Id, SId, and DId columns of a dataframe are...
pedrenum: Renumbers the Id, SId, and DId columns of a dataframe
plot.dmm: Plot residuals from fitting dyadic model
print.dmm: Print method for a 'dmm()' fitted model object.
print.gresponse.dmm: Print method for object of class 'gresponse.dmm'.
print.gsummary.dmm: Print method for object of class 'gsummary.dmm'.
print.summary.dmm: Print method for an object of class 'summary.dmm'.
quercus.df: Quercus example dataset
sheep.df: Demonstration sheep dataset
summary.dmm: Make summary tables of (co)variance component estimates for a...
summary.gresponse.dmm: Summary method for object of class 'gresponse.dmm'.
tstmo1.df: Dfreml example dataset
unfactor: Convert a vector from factor to numeric
warcolak.convert: Convert 'warcolak' data file to format required for a...

Functions

am.arel Man page Source code
am.zandrel Man page Source code
chartodec Man page Source code
combpaste Man page Source code
comtopar Man page Source code
condense.dmmarray Man page Source code
condense.dmmblockarray Man page Source code
countnotna Man page Source code
covcit Man page Source code
covlyz Man page Source code
covt Man page Source code
covtopar Man page Source code
crosseffectcovtopar Man page Source code
dmesolve Man page Source code
dmm Man page Source code
dmm-package Man page
dmm.array Man page Source code
dmm.blockarray Man page Source code
dmm.default Man page Source code
dt8bal.df Man page
duplicated.first Man page Source code
dyad.am.expect Man page Source code
expect.v Man page Source code
fixpaste Man page Source code
gls.b.gmat Man page Source code
gls.iter.b Man page Source code
gprint Man page Source code
gprint.dmm Man page Source code
gresponse Man page Source code
gresponse.dmm Man page Source code
gsummary Man page Source code
gsummary.dmm Man page Source code
harv101.df Man page
make.cohort Man page Source code
make.countarray Man page Source code
make.ctable Man page Source code
make.dmmobj Man page Source code
mdf Man page Source code
merino.df Man page
part.add Man page Source code
partocov Man page Source code
pedcheck Man page Source code
pedrenum Man page Source code
permpaste Man page Source code
plot.dmm Man page Source code
print.dmm Man page Source code
print.gresponse.dmm Man page Source code
print.gsummary.dmm Man page Source code
print.summary.dmm Man page Source code
quercus.df Man page
separ Man page Source code
sheep.df Man page
siga.posdef Man page Source code
summary.dmm Man page Source code
summary.gresponse.dmm Man page Source code
tstmo1.df Man page
unfactor Man page Source code
varlz Man page Source code
varz Man page Source code
vt Man page Source code
warcolak.convert Man page Source code

Files

inst
inst/doc
inst/doc/bugs.txt
inst/doc/dmmOverview.pdf
inst/doc/mods.txt
NAMESPACE
data
data/sheep.df.rda
data/quercus.df.rda
data/dt8bal.df.rda
data/merino.df.rda
data/tstmo1.df.rda
data/harv101.df.rda
R
R/dmm.default.R
R/covcit.R
R/pedrenum.R
R/summary.gresponse.dmm.R
R/comtopar.R
R/condense.dmmblockarray.R
R/pedcheck.R
R/separ.R
R/siga.posdef.R
R/covt.R
R/gprint.dmm.R
R/plot.dmm.R
R/dmm.array.R
R/dmm.blockarray.R
R/print.dmm.R
R/am.arel.R
R/combpaste.R
R/chartodec.R
R/permpaste.R
R/make.countarray.R
R/warcolak.convert.R
R/covtopar.R
R/dmm-internal.R
R/print.gsummary.dmm.R
R/am.zandrel.R
R/dyad.am.expect.R
R/gprint.R
R/partocov.R
R/gsummary.R
R/make.ctable.R
R/part.add.R
R/duplicated.first.R
R/gls.b.gmat.R
R/varz.R
R/print.summary.dmm.R
R/summary.dmm.R
R/make.dmmobj.R
R/varlz.R
R/expect.v.R
R/vt.R
R/gresponse.dmm.R
R/covlyz.R
R/unfactor.R
R/gsummary.dmm.R
R/dmm.R
R/dmesolve.R
R/fixpaste.R
R/gls.iter.b.R
R/crosseffectcovtopar.R
R/make.cohort.R
R/mdf.R
R/gresponse.R
R/condense.dmmarray.R
R/countnotna.R
R/print.gresponse.dmm.R
MD5
DESCRIPTION
man
man/sheep.df.Rd
man/make.dmmobj.Rd
man/pedrenum.Rd
man/merino.df.Rd
man/quercus.df.Rd
man/harv101.df.Rd
man/unfactor.Rd
man/make.ctable.Rd
man/summary.gresponse.dmm.Rd
man/print.gresponse.dmm.Rd
man/gsummary.dmm.Rd
man/gprint.Rd
man/summary.dmm.Rd
man/print.gsummary.dmm.Rd
man/tstmo1.df.Rd
man/condense.dmmarray.Rd
man/print.summary.dmm.Rd
man/dmm-package.Rd
man/chartodec.Rd
man/mdf.Rd
man/gresponse.dmm.Rd
man/make.countarray.Rd
man/condense.dmmblockarray.Rd
man/gprint.dmm.Rd
man/warcolak.convert.Rd
man/pedcheck.Rd
man/print.dmm.Rd
man/dmm.Rd
man/dmm-internal.Rd
man/plot.dmm.Rd
man/dt8bal.df.Rd
dmm documentation built on May 19, 2017, 9:36 a.m.

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