dmm: Dyadic Mixed Model for Pedigree Data

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Dyadic mixed model analysis with multi-trait responses and pedigree-based partitioning of individual variation into a range of environmental and genetic variance components for individual and maternal effects.

Author
Neville Jackson
Date of publication
2016-04-12 08:12:28
Maintainer
Neville Jackson <nanddjackson@bigpond.com>
License
GPL-2 | GPL (>= 2) | GPL-3
Version
1.7-1

View on CRAN

Man pages

chartodec
Convert a vector from character to decimal numbers
condense.dmmarray
Condense an object of type 'dmmarray' to an object of type...
condense.dmmblockarray
Condense an object of type 'dmmblockarray' to an object of...
dmm
Fit a dyadic mixed model to pedigree data
dmm-internal
Functions internal to dmm
dmm-package
Dyadic mixed model analysis for pedigree data
dt8bal.df
A balanced dataset with eight individuals.
gprint
Generic function for printing genetic parameters contained in...
gprint.dmm
Print method for genetic parameters contained in an object of...
gresponse.dmm
Compute response to selection, given phenotypic selection...
gsummary.dmm
Make summary tables of genetic parameters for a dmm object
harv101.df
Harvey dataset
make.countarray
Count the number of observations in a dataframe or an 'mdf'...
make.ctable
Generates a list of vectors containing sets of variance...
make.dmmobj
Construct an object of class 'dmm' from user-supplied data
mdf
Prepare a dataframe for use with dmm function
merino.df
Australian Merino sheep research dataset
pedcheck
Checks that the Id, SId, and DId columns of a dataframe are...
pedrenum
Renumbers the Id, SId, and DId columns of a dataframe
plot.dmm
Plot residuals from fitting dyadic model
print.dmm
Print method for a 'dmm()' fitted model object.
print.gresponse.dmm
Print method for object of class 'gresponse.dmm'.
print.gsummary.dmm
Print method for object of class 'gsummary.dmm'.
print.summary.dmm
Print method for an object of class 'summary.dmm'.
quercus.df
Quercus example dataset
sheep.df
Demonstration sheep dataset
summary.dmm
Make summary tables of (co)variance component estimates for a...
summary.gresponse.dmm
Summary method for object of class 'gresponse.dmm'.
tstmo1.df
Dfreml example dataset
unfactor
Convert a vector from factor to numeric
warcolak.convert
Convert 'warcolak' data file to format required for a...

Files in this package

dmm
dmm/inst
dmm/inst/doc
dmm/inst/doc/bugs.txt
dmm/inst/doc/dmmOverview.pdf
dmm/inst/doc/mods.txt
dmm/NAMESPACE
dmm/data
dmm/data/sheep.df.rda
dmm/data/quercus.df.rda
dmm/data/dt8bal.df.rda
dmm/data/merino.df.rda
dmm/data/tstmo1.df.rda
dmm/data/harv101.df.rda
dmm/R
dmm/R/dmm.default.R
dmm/R/covcit.R
dmm/R/pedrenum.R
dmm/R/summary.gresponse.dmm.R
dmm/R/comtopar.R
dmm/R/condense.dmmblockarray.R
dmm/R/pedcheck.R
dmm/R/separ.R
dmm/R/siga.posdef.R
dmm/R/covt.R
dmm/R/gprint.dmm.R
dmm/R/plot.dmm.R
dmm/R/dmm.array.R
dmm/R/dmm.blockarray.R
dmm/R/print.dmm.R
dmm/R/am.arel.R
dmm/R/combpaste.R
dmm/R/chartodec.R
dmm/R/permpaste.R
dmm/R/make.countarray.R
dmm/R/warcolak.convert.R
dmm/R/covtopar.R
dmm/R/dmm-internal.R
dmm/R/print.gsummary.dmm.R
dmm/R/am.zandrel.R
dmm/R/dyad.am.expect.R
dmm/R/gprint.R
dmm/R/partocov.R
dmm/R/gsummary.R
dmm/R/make.ctable.R
dmm/R/part.add.R
dmm/R/duplicated.first.R
dmm/R/gls.b.gmat.R
dmm/R/varz.R
dmm/R/print.summary.dmm.R
dmm/R/summary.dmm.R
dmm/R/make.dmmobj.R
dmm/R/varlz.R
dmm/R/expect.v.R
dmm/R/vt.R
dmm/R/gresponse.dmm.R
dmm/R/covlyz.R
dmm/R/unfactor.R
dmm/R/gsummary.dmm.R
dmm/R/dmm.R
dmm/R/dmesolve.R
dmm/R/fixpaste.R
dmm/R/gls.iter.b.R
dmm/R/crosseffectcovtopar.R
dmm/R/make.cohort.R
dmm/R/mdf.R
dmm/R/gresponse.R
dmm/R/condense.dmmarray.R
dmm/R/countnotna.R
dmm/R/print.gresponse.dmm.R
dmm/MD5
dmm/DESCRIPTION
dmm/man
dmm/man/sheep.df.Rd
dmm/man/make.dmmobj.Rd
dmm/man/pedrenum.Rd
dmm/man/merino.df.Rd
dmm/man/quercus.df.Rd
dmm/man/harv101.df.Rd
dmm/man/unfactor.Rd
dmm/man/make.ctable.Rd
dmm/man/summary.gresponse.dmm.Rd
dmm/man/print.gresponse.dmm.Rd
dmm/man/gsummary.dmm.Rd
dmm/man/gprint.Rd
dmm/man/summary.dmm.Rd
dmm/man/print.gsummary.dmm.Rd
dmm/man/tstmo1.df.Rd
dmm/man/condense.dmmarray.Rd
dmm/man/print.summary.dmm.Rd
dmm/man/dmm-package.Rd
dmm/man/chartodec.Rd
dmm/man/mdf.Rd
dmm/man/gresponse.dmm.Rd
dmm/man/make.countarray.Rd
dmm/man/condense.dmmblockarray.Rd
dmm/man/gprint.dmm.Rd
dmm/man/warcolak.convert.Rd
dmm/man/pedcheck.Rd
dmm/man/print.dmm.Rd
dmm/man/dmm.Rd
dmm/man/dmm-internal.Rd
dmm/man/plot.dmm.Rd
dmm/man/dt8bal.df.Rd