dmm: Dyadic Mixed Model for Pedigree Data

Dyadic mixed model analysis with multi-trait responses and pedigree-based partitioning of individual variation into a range of environmental and genetic variance components for individual and maternal effects.

AuthorNeville Jackson
Date of publication2016-04-12 08:12:28
MaintainerNeville Jackson <>
LicenseGPL-2 | GPL (>= 2) | GPL-3

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Man pages

chartodec: Convert a vector from character to decimal numbers

condense.dmmarray: Condense an object of type 'dmmarray' to an object of type...

condense.dmmblockarray: Condense an object of type 'dmmblockarray' to an object of...

dmm: Fit a dyadic mixed model to pedigree data

dmm-internal: Functions internal to dmm

dmm-package: Dyadic mixed model analysis for pedigree data

dt8bal.df: A balanced dataset with eight individuals.

gprint: Generic function for printing genetic parameters contained in...

gprint.dmm: Print method for genetic parameters contained in an object of...

gresponse.dmm: Compute response to selection, given phenotypic selection...

gsummary.dmm: Make summary tables of genetic parameters for a dmm object

harv101.df: Harvey dataset

make.countarray: Count the number of observations in a dataframe or an 'mdf'...

make.ctable: Generates a list of vectors containing sets of variance...

make.dmmobj: Construct an object of class 'dmm' from user-supplied data

mdf: Prepare a dataframe for use with dmm function

merino.df: Australian Merino sheep research dataset

pedcheck: Checks that the Id, SId, and DId columns of a dataframe are...

pedrenum: Renumbers the Id, SId, and DId columns of a dataframe

plot.dmm: Plot residuals from fitting dyadic model

print.dmm: Print method for a 'dmm()' fitted model object.

print.gresponse.dmm: Print method for object of class 'gresponse.dmm'.

print.gsummary.dmm: Print method for object of class 'gsummary.dmm'.

print.summary.dmm: Print method for an object of class 'summary.dmm'.

quercus.df: Quercus example dataset

sheep.df: Demonstration sheep dataset

summary.dmm: Make summary tables of (co)variance component estimates for a...

summary.gresponse.dmm: Summary method for object of class 'gresponse.dmm'.

tstmo1.df: Dfreml example dataset

unfactor: Convert a vector from factor to numeric

warcolak.convert: Convert 'warcolak' data file to format required for a...

Files in this package

dmm/R/dmm.default.R dmm/R/covcit.R dmm/R/pedrenum.R dmm/R/summary.gresponse.dmm.R dmm/R/comtopar.R dmm/R/condense.dmmblockarray.R dmm/R/pedcheck.R dmm/R/separ.R dmm/R/siga.posdef.R dmm/R/covt.R dmm/R/gprint.dmm.R dmm/R/plot.dmm.R dmm/R/dmm.array.R dmm/R/dmm.blockarray.R dmm/R/print.dmm.R dmm/R/am.arel.R dmm/R/combpaste.R dmm/R/chartodec.R dmm/R/permpaste.R dmm/R/make.countarray.R dmm/R/warcolak.convert.R dmm/R/covtopar.R dmm/R/dmm-internal.R dmm/R/print.gsummary.dmm.R dmm/R/am.zandrel.R dmm/R/ dmm/R/gprint.R dmm/R/partocov.R dmm/R/gsummary.R dmm/R/make.ctable.R dmm/R/part.add.R dmm/R/duplicated.first.R dmm/R/gls.b.gmat.R dmm/R/varz.R dmm/R/print.summary.dmm.R dmm/R/summary.dmm.R dmm/R/make.dmmobj.R dmm/R/varlz.R dmm/R/expect.v.R dmm/R/vt.R dmm/R/gresponse.dmm.R dmm/R/covlyz.R dmm/R/unfactor.R dmm/R/gsummary.dmm.R dmm/R/dmm.R dmm/R/dmesolve.R dmm/R/fixpaste.R dmm/R/gls.iter.b.R dmm/R/crosseffectcovtopar.R dmm/R/make.cohort.R dmm/R/mdf.R dmm/R/gresponse.R dmm/R/condense.dmmarray.R dmm/R/countnotna.R dmm/R/print.gresponse.dmm.R
dmm/man/sheep.df.Rd dmm/man/make.dmmobj.Rd dmm/man/pedrenum.Rd dmm/man/merino.df.Rd dmm/man/quercus.df.Rd dmm/man/harv101.df.Rd dmm/man/unfactor.Rd dmm/man/make.ctable.Rd dmm/man/summary.gresponse.dmm.Rd dmm/man/print.gresponse.dmm.Rd dmm/man/gsummary.dmm.Rd dmm/man/gprint.Rd dmm/man/summary.dmm.Rd dmm/man/print.gsummary.dmm.Rd dmm/man/tstmo1.df.Rd dmm/man/condense.dmmarray.Rd dmm/man/print.summary.dmm.Rd dmm/man/dmm-package.Rd dmm/man/chartodec.Rd dmm/man/mdf.Rd dmm/man/gresponse.dmm.Rd dmm/man/make.countarray.Rd dmm/man/condense.dmmblockarray.Rd dmm/man/gprint.dmm.Rd dmm/man/warcolak.convert.Rd dmm/man/pedcheck.Rd dmm/man/print.dmm.Rd dmm/man/dmm.Rd dmm/man/dmm-internal.Rd dmm/man/plot.dmm.Rd dmm/man/dt8bal.df.Rd

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