dna: Differential Network Analysis
Version 1.1-1

Package for conducting differential network analysis from microarray data.

AuthorRyan Gill, Somnath Datta, Susmita Datta
Date of publication2014-03-22 23:32:13
MaintainerRyan Gill <ryan.gill@louisville.edu>
LicenseGPL-2
Version1.1-1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("dna")

Popular man pages

get.common.networks-methods: Method for Function 'get.common.networks'
get.network1-methods: Method for Function 'get.network1'
get.network2-methods: Method for Function 'get.network2'
LeanMice: Lean Mice Dataset.
pairOfNetworks-class: Class '"pairOfNetworks"'
resultsIndTest-class: Class '"resultsIndTest"'
resultsModTest-class: Class '"resultsModTest"'
See all...

All man pages Function index File listing

Man pages

cornet: Correlation network
gennet: General Regression network
get.common.networks-methods: Method for Function 'get.common.networks'
get.modules-methods: Methods for Function 'get.modules'
get.network1-methods: Method for Function 'get.network1'
get.network2-methods: Method for Function 'get.network2'
get.results-methods: Method for Function 'get.results'
HeavyMice: Heavy Mice Dataset.
LeanMice: Lean Mice Dataset.
modules-class: Class '"modules"'
network.modules: Determine modules for network
pairOfNetworks-class: Class '"pairOfNetworks"'
PCnet: Principal Components network
PLSnet: Partial Least Squares network
resultsClassTest-class: Class '"resultsClassTest"'
resultsIndTest-class: Class '"resultsIndTest"'
resultsModTest-class: Class '"resultsModTest"'
RRnet: Ridge Regression network
summary-methods: Methods for Function 'summary'
test.class.genes: Test for differential connectivity of a class of genes
test.individual.genes: Test for differential connectivity of individual genes
test.modular.structure: Test for differential modular structures

Functions

Files

inst
inst/doc
inst/doc/Introduction.Rnw
inst/doc/Introduction.R
inst/doc/Introduction.pdf
src
src/rrunif.c
src/Makevars
src/rpcnet.c
src/absDISTsinglegene.c
src/UnionIntersectionStat.c
src/rcor.c
src/sqrDISTsinglegene.c
src/rrrnet.c
src/tdcindPC.c
src/absDISTclassgenes.c
src/tdcindPLS.c
src/rplsnet.c
src/tdmsPC.c
src/tdcindRR.c
src/tdcclassPC.c
src/tdmsRR.c
src/rgmd.c
src/tdmsPLS.c
src/plslib.h
src/perm.c
src/tdcclassRR.c
src/tdcclassPLS.c
src/sqrDISTclassgenes.c
NAMESPACE
data
data/LeanMice.rda
data/HeavyMice.rda
R
R/test.modular.structure.R
R/get.common.networks-methods.R
R/RRnet.R
R/onAttach.R
R/AllClass.R
R/test.individual.genes.R
R/AllSummary.R
R/cornet.R
R/network.modules.R
R/get.modules-methods.R
R/get.network1-methods.R
R/AllShow.R
R/gennet.R
R/PCnet.R
R/get.network2-methods.R
R/test.class.genes.R
R/AllGeneric.R
R/AllGetResults.R
R/PLSnet.R
vignettes
vignettes/Introduction.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/cornet.rd
man/get.common.networks-methods.rd
man/gennet.rd
man/resultsIndTest-class.rd
man/get.modules-methods.rd
man/network.modules.rd
man/test.individual.genes.rd
man/pairOfNetworks-class.rd
man/test.class.genes.rd
man/summary-methods.rd
man/RRnet.rd
man/HeavyMice.rd
man/modules-class.rd
man/resultsClassTest-class.rd
man/LeanMice.rd
man/PCnet.rd
man/PLSnet.rd
man/resultsModTest-class.rd
man/test.modular.structure.rd
man/get.results-methods.rd
man/get.network1-methods.rd
man/get.network2-methods.rd
dna documentation built on May 19, 2017, 10:48 p.m.

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