get.common.networks-methods: Method for Function 'get.common.networks'

In dna: Differential Network Analysis

Description

get.common.networks-methods

Methods

signature(object = "pairOfNetworks")

returns the pair of networks from an object of class "pairOfNetworks". The network includes only the genes common to both networks, and the genes are listed in the same order for each network.

Examples

# small example illustrating how a pair of networks is
# preprocessed to obtain and align a set of common genes
X1=rbind(
c(2.5,6.7,4.5,2.3,8.4,3.1),
c(1.2,0.7,4.0,9.1,6.6,7.1),
c(4.3,-1.2,7.5,3.8,1.0,9.3),
c(9.5,7.6,5.4,2.3,1.1,0.2))
colnames(X1)=paste("G",1:6,sep="")
X2=rbind(
c(4.5,2.4,6.8,5.6,4.5,1.2,4.5),
c(7.6,9.0,0.1,3.4,5.6,5.5,1.2),
c(8.3,4.5,7.0,1.2,4.3,3.7,6.8),
c(3.4,1.1,6.9,7.2,3.1,0.9,6.6),
c(3.4,2.2,1.3,5.5,9.8,6.7,0.6))
colnames(X2)=paste("G",8:2,sep="")
networks=new("pairOfNetworks",network1=X1,network2=X2)
get.common.networks(networks)

dna documentation built on July 8, 2020, 7:26 p.m.