| cornet | Correlation network | 
| gennet | General Regression network | 
| get.common.networks-methods | Method for Function 'get.common.networks' | 
| get.modules-methods | Methods for Function 'get.modules' | 
| get.network1-methods | Method for Function 'get.network1' | 
| get.network2-methods | Method for Function 'get.network2' | 
| get.results-methods | Method for Function 'get.results' | 
| HeavyMice | Heavy Mice Dataset. | 
| LeanMice | Lean Mice Dataset. | 
| modules-class | Class '"modules"' | 
| network.modules | Determine modules for network | 
| pairOfNetworks-class | Class '"pairOfNetworks"' | 
| PCnet | Principal Components network | 
| PLSnet | Partial Least Squares network | 
| resultsClassTest-class | Class '"resultsClassTest"' | 
| resultsIndTest-class | Class '"resultsIndTest"' | 
| resultsModTest-class | Class '"resultsModTest"' | 
| RRnet | Ridge Regression network | 
| summary-methods | Methods for Function 'summary' | 
| test.class.genes | Test for differential connectivity of a class of genes | 
| test.individual.genes | Test for differential connectivity of individual genes | 
| test.modular.structure | Test for differential modular structures | 
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