doBy: Groupwise Statistics, LSmeans, Linear Contrasts, Utilities
Version 4.5-15

The facilities can roughly be grouped as: . 1) Facilities for groupwise computations of summary statistics and other facilities for working with grouped data: 'do' something to data stratified 'by' some variables. . 2) LSmeans (least-squares means), general linear contrasts. . 3) Miscellaneous other utilities.

AuthorSren Hjsgaard <sorenh@math.aau.dk> and Ulrich Halekoh <uhalekoh@health.sdu.dk>
Date of publication2016-03-31 17:38:50
MaintainerSren Hjsgaard <sorenh@math.aau.dk>
LicenseGPL (>= 2)
Version4.5-15
URL http://people.math.aau.dk/~sorenh/software/doBy/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("doBy")

Popular man pages

DATA-codstom: Diet of Atlantic cod in the Gulf of St. Lawrence (Canada)
DATA-milkman: Milk yield data for manually milked cows.
esticon: Contrasts for lm, glm, lme, and geeglm objects
lapplyBy: Formula based version of lapply
LSmeans: Compute linear estimates, including LS-means (aka population...
subsetBy: Finds subsets of a dataframe which is split by variables in a...
summaryBy: Function to calculate groupwise summary statistics
See all...

All man pages Function index File listing

Man pages

createFunBy: A template function for creating groupwise functions
DATA-beets: Yield and sugar percentage in sugar beets from a split plot...
DATA-breastcancer: Gene expression signatures for p53 mutation status in 250...
DATA-budworm: Effect of Insecticide on survivial of tobacco budworms
DATA-carcass: Lean meat contents of 344 pig carcasses
DATA-codstom: Diet of Atlantic cod in the Gulf of St. Lawrence (Canada)
DATA-crimeRate: crimeRate
DATA-dietox: Growth curves of pigs in a 3x3 factorial experiment
DATA-haldCement: Heat development in cement under hardening.
DATA-milkman: Milk yield data for manually milked cows.
DATA-NIRmilk: NIRmilk
DATA-potatoes: Weight and size of 20 potatoes
descStat: Computing simple descriptive statistics of a numeric vector.
doBy: Various utilitie. Functions for creating groupwise...
doBy-internal: Internal functions for the doBy package
esticon: Contrasts for lm, glm, lme, and geeglm objects
firstlastobs: Locate the index of the first/last unique value
is_estimable: Determines if contrasts are estimable.
lapplyBy: Formula based version of lapply
linest: Compute linear estimates
lmBy: List of lm objects with a common model
LSmeans: Compute linear estimates, including LS-means (aka population...
null_basis: Finds the basis of the (right) null space.
orderBy: Ordering (sorting) rows of a data frame
parseGroupFormula: Extract components from a formula with "conditioning bar"
recodeVar: Recode values of a vector
renameCol: Rename columns in a matrix or a dataframe.
sampleBy: Sampling from a data frame
scaleBy: Groupwise scaling and centering of numeric columns in a...
splitBy: Split a data frame
subSeq: Find sub-sequences of identical elements in a vector.
subsetBy: Finds subsets of a dataframe which is split by variables in a...
summaryBy: Function to calculate groupwise summary statistics
timeSinceEvent: Calculate "time since event" in a vector.
transformBy: Function to make groupwise transformations
which.maxn: Where are the n largest or n smallest elements in a numeric...

Functions

HTMLCommand2 Man page
HTMLdefault2 Man page
LSmatrix Man page Source code
LSmatrix-class Man page
LSmatrix.default Man page Source code
LSmeans Man page Source code
LSmeans.default Man page Source code
LSmeans.geeglm Man page
LSmeans.glm Man page
LSmeans.lm Man page
LSmeans.lmerMod Man page Source code
LSmeans.merMod Man page
NIRmilk Man page
RweaveHTML2 Man page
RweaveHTMLRuncode2 Man page
RweaveHTMLreport Man page
RweaveHTMLreportFinish Man page
RweaveHTMLreportSetup Man page
RweaveHTMLreportWritedoc Man page
asNumericMatrix2 Man page Source code
beets Man page
breastcancer Man page
budworm Man page
carcass Man page
carcassall Man page
codstom Man page
coef.lmBy Man page Source code
coef.summary_lmBy Man page Source code
createFunBy Man page
crimeRate Man page
defineK Source code
descStat Man page Source code
dietox Man page
doBy Man page
doby.xtabs Man page Source code
esticon Man page Source code
esticon.coxph Man page Source code
esticon.geeglm Man page Source code
esticon.glm Man page Source code
esticon.gls Man page Source code
esticon.lm Man page Source code
esticon.lme Man page Source code
esticon.mer Man page
esticon.merMod Man page
esticonCore Source code
finalize_linest Source code
finalize_linest_list Source code
find.inc.dec Source code
firstobs Man page Source code
firstobs.default Man page Source code
firstobs.formula Man page Source code
fitted.lmBy Man page Source code
formulaFunBy Man page Source code
funBy Man page
getBy Man page Source code
getKb Source code
get_X Man page Source code
get_X.default Man page Man page Source code
get_X.merMod Man page Man page Source code
get_col_names Source code
get_contrasts Man page Source code
get_contrasts.default Man page Man page Source code
get_contrasts.merMod Man page Man page Source code
get_covariate_ave Source code
get_fun_names Source code
get_linest_list Source code
get_null_basis.Matrix Man page
get_null_basis.default Man page
get_null_basis.matrix Man page
get_rhs_string Source code
get_variables Source code
get_vartypes Man page Source code
get_xlevels Man page Source code
get_xlevels.default Man page Man page Source code
get_xlevels.mer Man page Man page Source code
get_xlevels.merMod Man page Man page Source code
haldCement Man page
internal Man page
is_estimable Man page Man page Source code
lapplyBy Man page Source code
lastobs Man page Source code
lastobs.default Man page Source code
lastobs.formula Man page Source code
lhsParse Source code
linest Man page Source code
linest.default Man page
linest.geeglm Man page Source code
linest.glm Man page Source code
linest.lm Man page Source code
linest.lmerMod Man page Source code
linest.merMod Man page Source code
linestMatrix Man page
linestMatrix.default Man page
lmBy Man page Source code
matrix2dataFrame2 Man page Source code
milkman Man page
nullBasis Man page
nullBasis.Matrix Man page
nullBasis.geeglm Man page
nullBasis.glm Man page
nullBasis.lm Man page
nullBasis.lmerMod Man page
nullBasis.matrix Man page
null_basis Man page Man page Source code
orderBy Man page Source code
parseGroupFormula Man page Source code
pdiff Man page
popMeans Man page
popMeans.default Man page
popMeans.lmerMod Man page
potatoes Man page
print.LSmatrix Man page Source code
print.linearEstimate Man page Source code
print.linest Man page
print.linestMatrix Man page
print.lmBy Man page Source code
print.splitByData Man page Source code
print.summary_lmBy Man page Source code
recodeVar Man page Source code
renameCol Man page Source code
residuals.lmBy Man page Source code
sampleBy Man page Source code
scaleBy Man page Source code
set_covariate_val Man page Source code
set_xlevels Man page Source code
specialize Man page Source code
splitBy Man page Source code
subSeq Man page Source code
subsAttr2 Man page Source code
subsetBy Man page Source code
summary.lmBy Man page Source code
summaryBy Man page Source code
timeSinceEvent Man page Source code Source code
transformBy Man page Source code
wald Source code
which.maxn Man page Source code
which.minn Man page Source code
xyFunBy Man page Source code

Files

inst
inst/doc
inst/doc/doBy.R
inst/doc/doBy.Rnw
inst/doc/LSmeans.R
inst/doc/LSmeans.Rnw
inst/doc/LSmeans.pdf
inst/doc/doBy.pdf
NAMESPACE
data
data/codstom.rda
data/milkman.rda
data/NIRmilk.rda
data/breastcancer.rda
data/dietox.rda
data/carcassall.txt.gz
data/carcass.txt.gz
data/crimeRate.txt.gz
data/budworm.txt.gz
data/haldCement.txt.gz
data/potatoes.txt.gz
data/datalist
data/beets.txt.gz
R
R/linestGet.R
R/BY-funBy.R
R/dobyxtabs.R
R/specialize.R
R/firstlastObs.R
R/BY-subsetBy.R
R/recodeVar.R
R/BY-lapplyBy.R
R/renameCol.R
R/HmiscStuff.R
R/BY-splitBy2.R
R/subSeq.R
R/timeSinceEvent.R
R/linest.R
R/descStat.R
R/BY-summaryBy2.R
R/BY-orderBy.R
R/BY-sampleBy.R
R/which.maxn.R
R/linestLSmatrix.R
R/BY-transformBy.R
R/BY-lmBy.R
R/linestUtilities.R
R/esticon.R
R/BY-scaleBy2.R
vignettes
vignettes/doBy.Rnw
vignettes/doBy.bib
vignettes/LSmeans.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/orderBy.Rd
man/DATA-NIRmilk.Rd
man/DATA-carcass.Rd
man/timeSinceEvent.Rd
man/null_basis.Rd
man/doBy.Rd
man/subSeq.Rd
man/sampleBy.Rd
man/renameCol.Rd
man/scaleBy.Rd
man/summaryBy.Rd
man/doBy-internal.Rd
man/DATA-potatoes.Rd
man/firstlastobs.Rd
man/lmBy.Rd
man/transformBy.Rd
man/LSmeans.Rd
man/DATA-haldCement.Rd
man/DATA-dietox.Rd
man/descStat.Rd
man/recodeVar.Rd
man/DATA-crimeRate.Rd
man/lapplyBy.Rd
man/DATA-beets.Rd
man/esticon.Rd
man/linest.Rd
man/subsetBy.Rd
man/which.maxn.Rd
man/createFunBy.Rd
man/splitBy.Rd
man/is_estimable.Rd
man/parseGroupFormula.Rd
man/DATA-breastcancer.Rd
man/DATA-codstom.Rd
man/DATA-milkman.Rd
man/DATA-budworm.Rd
doBy documentation built on May 19, 2017, 9:07 a.m.

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