bai.out: Basal Area Increment (Outside In)

View source: R/bai.out.R

bai.outR Documentation

Basal Area Increment (Outside In)


Convert multiple ring-width series to basal area increment (i.e., ring area) going from the bark to the pith.


bai.out(rwl, diam = NULL)



a data.frame with series as columns and years as rows such as that produced by read.rwl


an optional data.frame containing two variables. If present, variable one (series in the example below) gives the series ID as either characters or factors. These must exactly match colnames(rwl). Variable two (diam in the example below) gives the diameter of the tree (in mm) up to the outermost ring (e.g., the diameter of the tree where the core was taken minus the thickness of the bark). If diam is NULL then the diameter is taken as twice the sum of the widths for each series (column) in rwl.


This converts ring-width series (mm) to ring-area series (mm squared) (aka basal area increments) based on the diameter of the tree and the width of each ring moving towards the pith of the tree. It is related to, which calculates each ring area starting from the inside of the tree and working outward. Both methods assume a circular cross section (Biondi 1999). See the references below for further details.


A data.frame containing the ring areas for each series with column names, row names and dimensions of rwl.


DendroLab website:


Code by Andy Bunn based on work from DendroLab, University of Nevada Reno, USA. Patched and improved by Mikko Korpela.


Biondi, F. (1999) Comparing tree-ring chronologies and repeated timber inventories as forest monitoring tools. Ecological Applications, 9(1), 216–227.

Biondi, F. and Qeadan, F. (2008) A theory-driven approach to tree-ring standardization: Defining the biological trend from expected basal area increment. Tree-Ring Research, 64(2), 81–96.

See Also


## Not run: 
## Toy
n <- 100
## Make three fake tree-ring series to show that these funcs work on rwl objects
base.series <- 0.75 + exp(-0.2 * 1:n)
rwl <- data.frame(x1 = base.series + abs(rnorm(n, 0, 0.05)),
                  x2 = base.series + abs(rnorm(n, 0, 0.05)),
                  x3 = base.series + abs(rnorm(n, 0, 0.05)))

## The inside out method
foo <- = rwl)
## The outside in method
bar <- bai.out(rwl = rwl)

## Identical

## End(Not run)
## Use gp data
## dbh (minus the bark) from cm to mm 
gp.dbh2 <- gp.dbh[, 1:2]
gp.dbh2[, 2] <- (gp.dbh[, 2] - gp.dbh[, 3]) * 10
bar <- bai.out(rwl = gp.rwl, diam = gp.dbh2)
bar.crn <- chron(bar)
yrs <- time(bar.crn)
plot(yrs, bar.crn[, 1], type = "n",
     xlab = "Year", ylab = expression(mm^2))
lines(yrs, bar.crn[, 1], col = "grey", lty = "dashed")
lines(yrs, caps(bar.crn[, 1], nyrs = 32), col = "red", lwd = 2)

dplR documentation built on June 22, 2024, 9:59 a.m.