empty_drop_citeseq_mtx: small example CITE-seq protein dataset for 87 surface protein...
In dsb: Normalize & Denoise Droplet Single Cell Protein Data (CITE-Seq)
empty_drop_citeseq_mtx R Documentation
small example CITE-seq protein dataset for 87 surface protein in 8005 empty droplets
Description
A matrix of empty background droplet counts for surface proteins measured with CITE-seq antibodies. This data is used for example scripts in the dsb package. Raw data was processed with CITE-seq-Count.
Usage
empty_drop_citeseq_mtx
Format
An R matrix, rows: 87 proteins, columns: 8005 empty droplets.
- empty_drop_citeseq_mtx
R matrix of empty / background droplets from a CITE-seq experiment. Negative drops were called on cell hashing data with Seurat's HTODemux function and cross referencing mRNA in droplets against patient genotypes with Demuxlet. Ambiguous drops, and with less than 80 unique mRNA were removed. This is used for robust estimation of the background distribution of each protein
References
Kotliarov et. al. 2020 Nat. Medicine
dsb documentation built on June 22, 2024, 9:35 a.m.
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| empty_drop_citeseq_mtx | R Documentation |
small example CITE-seq protein dataset for 87 surface protein in 8005 empty droplets
Description
A matrix of empty background droplet counts for surface proteins measured with CITE-seq antibodies. This data is used for example scripts in the dsb package. Raw data was processed with CITE-seq-Count.
Usage
empty_drop_citeseq_mtx
Format
An R matrix, rows: 87 proteins, columns: 8005 empty droplets.
- empty_drop_citeseq_mtx
R matrix of empty / background droplets from a CITE-seq experiment. Negative drops were called on cell hashing data with Seurat's HTODemux function and cross referencing mRNA in droplets against patient genotypes with Demuxlet. Ambiguous drops, and with less than 80 unique mRNA were removed. This is used for robust estimation of the background distribution of each protein
References
Kotliarov et. al. 2020 Nat. Medicine
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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