dslice: Dynamic Slicing

Share:

Dynamic slicing is a method designed for dependency detection between a categorical variable and a continuous variable. It could be applied for non-parametric hypothesis testing and gene set enrichment analysis.

Author
Chao Ye and Bo Jiang
Date of publication
2015-11-16 16:20:17
Maintainer
Chao Ye <yechao1009@gmail.com>
License
GPL (>= 2)
Version
1.1.5

View on CRAN

Man pages

ds_1
Non-parametric one-sample hypothesis testing via dynamic...
ds_eqp_1
Non-parametric one-sample hypothesis testing via dynamic...
ds_eqp_k
Dependency detection between level k (k > 1) categorical...
ds_gsa
Gene set analysis via dynamic slicing
ds_k
Dependency detection between level k (k > 1) categorical...
ds_test
Hypothesis testing via dynamic slicing
export_res
Export gene set analysis result
gsa_exp
Gene expression matrix in gene set analysis
gsa_label
Sample labels in gene set analysis
gsa_set
Gene set list in gene set analysis
load_cls
Load phenotype file
load_gct
Load gene expression file
load_gmt
Load gene set file
rank_by_s2n
Ranking genes by signal to noise ratio
relabel
Reassigning values of categorical variable
slice_show
Show the slicing result

Files in this package

dslice
dslice/inst
dslice/inst/CITATION
dslice/inst/doc
dslice/inst/doc/dslice.Rnw
dslice/inst/doc/dslice.pdf
dslice/inst/doc/dslice.R
dslice/src
dslice/src/dslice_eqp_k.cpp
dslice/src/ds_eqp_k.cpp
dslice/src/ds_1.cpp
dslice/src/ds_eqp_1.cpp
dslice/src/dslice_k.cpp
dslice/src/RcppExports.cpp
dslice/src/ds_k.cpp
dslice/NAMESPACE
dslice/data
dslice/data/gsa_exp.RData
dslice/data/datalist
dslice/data/gsa_set.RData
dslice/data/gsa_label.RData
dslice/R
dslice/R/load_gct.R
dslice/R/relabel.R
dslice/R/load_gmt.R
dslice/R/slice_show.R
dslice/R/ds_test.R
dslice/R/RcppExports.R
dslice/R/load_cls.R
dslice/R/ds_gsa.R
dslice/R/export_res.R
dslice/R/rank_by_s2n.R
dslice/vignettes
dslice/vignettes/dslice.Rnw
dslice/vignettes/dslice.bib
dslice/MD5
dslice/build
dslice/build/vignette.rds
dslice/DESCRIPTION
dslice/man
dslice/man/ds_eqp_1.Rd
dslice/man/gsa_label.Rd
dslice/man/gsa_exp.Rd
dslice/man/load_gmt.Rd
dslice/man/load_cls.Rd
dslice/man/ds_k.Rd
dslice/man/ds_gsa.Rd
dslice/man/load_gct.Rd
dslice/man/slice_show.Rd
dslice/man/rank_by_s2n.Rd
dslice/man/ds_eqp_k.Rd
dslice/man/ds_test.Rd
dslice/man/ds_1.Rd
dslice/man/relabel.Rd
dslice/man/export_res.Rd
dslice/man/gsa_set.Rd