gsa_set: Gene set list in gene set analysis

In dslice: Dynamic Slicing

Gene set list in gene set analysis

Description

Gene set provided by Subramanian et al., (2005). A list with gene set vector, gene set description vector and a list whose elements are vector of genes in each gene set.

Usage

data(gsa_set)

Format

A list with three elements: gene set name, gene set description and genes in gene set.

set_name

a character vector of gene set name.

set_description

a character vector of gene set description.

set_description

a list whose elements are vector. Each of them contains genes in each gene set.

Source

http://www.broadinstitute.org/gsea

References

Subramanian, A., Tamayo, P., Mootha, V. K., et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102(43): 15545-15550.

Examples

data(gsa_set)

dslice documentation built on Nov. 22, 2023, 9:06 a.m.