gsa_label: Sample labels in gene set analysis

Description Usage Format Source References Examples

Description

P53 NCI-60 data set provided by Subramanian et al., (2005). A list with phenotypes vector and a vector of sample label values.

Usage

1

Format

A list on the following 2 variables.

pheotype

a character vector contains two genotypes.

value

a numeric vector contains sample label 0 and 1, where 0 and 1 stands for “MUT” and “WT”, respectively.

Source

http://www.broadinstitute.org/gsea

References

Subramanian, A., Tamayo, P., Mootha, V. K., et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102(43): 15545-15550.

Examples

1

dslice documentation built on May 2, 2019, 9:39 a.m.