Description Usage Details Author(s)
Internal eNetXplorer functions
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 | eNetXplorerGaussian(x, y, family, alpha, nlambda, nlambda.ext, seed, scaled,
n_fold, n_run, n_perm_null, save_lambda_QF_full, QF.FUN, QF_label, cor_method, ...)
eNetXplorerBinomial(x, y, family, alpha, nlambda, nlambda.ext, seed, scaled,
n_fold, n_run, n_perm_null, save_lambda_QF_full, QF.FUN, QF_label, binom_method,
binom_pos, fscore_beta, fold_distrib_fail.max, ...)
eNetXplorerMultinomial(x, y, family, alpha, nlambda, nlambda.ext, seed, scaled,
n_fold, n_run, n_perm_null, save_lambda_QF_full, QF.FUN, QF_label, multinom_method,
fscore_beta, fold_distrib_fail.max, ...)
eNetXplorerCox <- function(x, y, family, alpha, nlambda, nlambda.ext, seed, scaled,
n_fold, n_run, n_perm_null, save_lambda_QF_full, QF.FUN, QF_label, cox_index, ...)
plotMeasuredVsOOBNumer <- function (x, alpha.index, xlab, ylab, cex.lab, main,
col.main, cex.main, instance.label, instance.label.cex, instance.label.offset,
instance.label.added.margin, col, ...)
plotMeasuredVsOOBCateg <- function (x, alpha.index, xlab, ylab, cex.lab, main,
col.main, cex.main, instance.label, instance.label.cex, instance.label.offset,
box.wex, box.range, box.col,
transparency, jitter, cex.pt, class.color, ...)
plotFeatureCaterpillarMultinom(x, alpha.index, stat, feature.all,
feature.pval.thres, feature.set, feature.top.n, signif.code, xlab, ylab, main,
col.main, cex.main, line, subtitle, col.subtitle, line.subtitle, cex.subtitle,
cexRow, cex.lab, legend, ...)
plotFeatureHeatmapMultinom(x, alpha.index, stat, feature.all, feature.pval.thres,
feature.set, feature.top.n, signif.code, xlab, ylab, main, col.main, cex.main,
line, col, breaks, scale, Rowv, Colv, na.color, cexRow, srtRow, cexCol, srtCol,
margins, key, key.title, dendogram, trace, notecol.freq, notecol.coef, notecex,
subtitle1, col.subtitle1, line.subtitle1, cex.subtitle1, subtitle2,
col.subtitle2, line.subtitle2, cex.subtitle2, ...)
|
These functions are not part of the package application programming interface (API) and are not intended for use by end users. Functions
eNetXplorerGaussian
, eNetXplorerBinomial
, eNetXplorerMultinomial
and eNetXplorerCox
are called by function eNetXplorer
to run models of
type linear, binomial, multinomial and Cox, respectively. Functions plotMeasuredVsOOBNumer
and plotMeasuredVsOOBCateg
are called by function plotMeasuredVsOOB
to generate plots for linear and categorical models, respectively. For multinomial models, functions plotFeatureCaterpillarMultinom
and plotFeatureHeatmapMultinom
are called
by functions plotFeatureCaterpillar
and plotFeatureHeatmap
, respectively.
Julian Candia and John S. Tsang
Maintainer: Julian Candia julian.candia@nih.gov
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.