dprocess_dgeList: Filter Low-Expressed Genes and Normalize DGEList Data

View source: R/limma.R

dprocess_dgeListR Documentation

Filter Low-Expressed Genes and Normalize DGEList Data

Description

This function filters out low-expressed genes from a DGEList object and normalizes the count data. It also provides diagnostic plots for raw and filtered data.

Usage

dprocess_dgeList(x, group.column, min.count = 10)

Arguments

x

A DGEList object containing raw count data.

group.column

The name of the column in x$samples that contains the grouping information for the samples.

min.count

The minimum number of counts required for a gene to be considered expressed. Genes with counts below this threshold in any group will be filtered out. Defaults to 10.

Value

The function returns a DGEList object with low-expressed genes filtered out and normalization factors calculated.


easybio documentation built on Sept. 17, 2024, 1:08 a.m.