prepare_tcga: Prepare TCGA Data for Analysis
In easybio: Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit
prepare_tcga R Documentation
Prepare TCGA Data for Analysis
Description
This function prepares TCGA data for downstream analyses such as differential expression analysis with limma or survival analysis.
It extracts and processes the necessary information from the TCGA data object, separating tumor and non-tumor samples.
Usage
prepare_tcga(data)
Arguments
data
A SummarizedExperiment object containing TCGA data, typically obtained from R package TCGABiolinks.
Value
A list.
easybio documentation built on Sept. 17, 2024, 1:08 a.m.
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| prepare_tcga | R Documentation |
Prepare TCGA Data for Analysis
Description
This function prepares TCGA data for downstream analyses such as differential expression analysis with limma or survival analysis.
It extracts and processes the necessary information from the TCGA data object, separating tumor and non-tumor samples.
Usage
prepare_tcga(data)
Arguments
data |
A |
Value
A list.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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