plotEnrichment2: Plot Enrichment for a Specific Pathway in fgsea

View source: R/ora.R

plotEnrichment2R Documentation

Plot Enrichment for a Specific Pathway in fgsea

Description

This function creates a plot of enrichment scores for a specified pathway. It provides a visual representation of the enrichment score (ES) along with the ranks and ticks indicating the GSEA walk length.

Usage

plotEnrichment2(pathways, pwayname, stats, gseaParam = 1, ticksSize = 0.2)

Arguments

pathways

A list of pathways.

pwayname

The name of the pathway for which to plot enrichment.

stats

A rank vector obtained from the 'fgsea' package.

gseaParam

The GSEA walk length parameter. Default is 1.

ticksSize

The size of the tick marks. Default is 0.2.

Value

A ggplot object representing the enrichment plot.


easybio documentation built on Sept. 17, 2024, 1:08 a.m.