read_nem: Build easynem-class objects from their csv file

In easynem: Nematode Community Analysis

Build easynem-class objects from their csv file

Description

read_nem() is a constructor method. This is the main method suggested for constructing an experiment-level (easynem-class) object from its component data (component data: tab, tax, meta).

Usage

read_nem(tab = 0, tax = 0, meta = 0, ...)

Arguments

tab	Nematode abundance table.
tax	Nematode abundance table.
meta	Experimental design table.
...	Other default parameters for read_csv function.

Value

An easynem object. The components in the class are interconnected to facilitate the subsequent screening and management of nematode data. When this class is generated, it will automatically check whether there is nematode information in the species classification table. If not, it will not be associated with the nematode database.

See Also

read_nem2

Examples

easynem <- read_nem(tab = easynem_example("nemtab.csv"),
                    tax = easynem_example("nemtax.csv"),
                    meta = easynem_example("nemmeta.csv"))
show(easynem)

easynem documentation built on Nov. 5, 2025, 7:39 p.m.