ebimetagenomics: EBI Metagenomics Portal
Version 0.2

Functions for querying the EBI Metagenomics Portal (https://www.ebi.ac.uk/metagenomics/). The current main focus is on taxa abundance data, but the intention is that this package should evolve into a general purpose package for working with EBI Metagenomics data using R.

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AuthorDarren Wilkinson
Date of publication2016-10-16 19:23:15
MaintainerDarren Wilkinson <darren.wilkinson@ncl.ac.uk>
LicenseLGPL-3
Version0.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ebimetagenomics")

Man pages

convertOtuTad: Converts an OTU count data frame to a TAD data frame
getProjectsList: Download the EMG projects list into a data frame
getProjectSummary: Download an EMG project summary into a data frame
getRunOtu: Downloads OTU count data associated with a EMG run
getSampleOtu: Downloads and merges all of the OTU count data associated...
mergeOtu: Merges two OTU count data data frames to produce a combined...
plotOtu: Plots OTU count data
projectRuns: Find runs associated with an EMG project
projectSamples: Find samples associated with an EMG project
runsBySample: Find runs associated with a particular sample ID within an...

Functions

convertOtuTad Man page Source code
getProjectSummary Man page Source code
getProjectsList Man page Source code
getRunOtu Man page Source code
getSampleOtu Man page Source code
mergeOtu Man page Source code
otu.url Source code
plotOtu Man page Source code
projectRuns Man page Source code
projectSamples Man page Source code
read.otu.tsv Source code
read.project.csv Source code
runsBySample Man page Source code

Files

NAMESPACE
R
R/emg.R
MD5
DESCRIPTION
man
man/convertOtuTad.Rd
man/getRunOtu.Rd
man/getSampleOtu.Rd
man/plotOtu.Rd
man/runsBySample.Rd
man/getProjectSummary.Rd
man/mergeOtu.Rd
man/projectRuns.Rd
man/projectSamples.Rd
man/getProjectsList.Rd
ebimetagenomics documentation built on May 20, 2017, 2:32 a.m.