getProjectsList: Download the EMG projects list into a data frame
In ebimetagenomics: EBI Metagenomics Portal
Description
Usage
Value
See Also
Examples
Description
This downloads an EMG projects list (detailed info) into an R data frame for subsequent analysis.
Usage
1
Value
An R data frame containing a list of all public EMG projects, one row
per project. The row names correspond to the accession ID.
See Also
getProjectSummary, projectSamples
Examples
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pl = getProjectsList()
str(pl)
# Find big projects
biggies = pl$accession[pl$samples_count >= 100]
ps = getProjectSummary(biggies[3])
# Find some 16S projects
pl$accession[agrep("16S",pl$study_name)]
# Look up primary accession using secondary accession
pl$accession[pl$secondary_accession=="SRP047083"]
ebimetagenomics documentation built on May 2, 2019, 9:29 a.m.
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Description Usage Value See Also Examples
Description
This downloads an EMG projects list (detailed info) into an R data frame for subsequent analysis.
Usage
1 |
Value
An R data frame containing a list of all public EMG projects, one row per project. The row names correspond to the accession ID.
See Also
getProjectSummary, projectSamples
Examples
1 2 3 4 5 6 7 8 9 10 11 12 | pl = getProjectsList()
str(pl)
# Find big projects
biggies = pl$accession[pl$samples_count >= 100]
ps = getProjectSummary(biggies[3])
# Find some 16S projects
pl$accession[agrep("16S",pl$study_name)]
# Look up primary accession using secondary accession
pl$accession[pl$secondary_accession=="SRP047083"]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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