Description Usage Arguments Value See Also Examples
This function downloads an OTU count data file associated with a particular run from the EMG portal. The OTU data is returned as a data frame.
1 |
runID |
A string representing a valid run ID. |
verb |
If true, outputs |
plot.preston |
If true, produces a Preston plot for the taxa abundance distribution of the run. |
An R data frame containing OTU count data. The first column is the OTU ID, the second is the count, and the third contains a taxonomic classification.
getSampleOtu
, mergeOtu
, projectRuns
, convertOtuTad
, plotOtu
, read.otu.tsv
1 2 3 4 | ps=getProjectSummary("SRP047083")
samp=projectSamples(ps)
runs=runsBySample(ps,samp[2])
getRunOtu(runs[1])
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