plot_taxa_accum_time | R Documentation |
Plot taxa accumulation through time
plot_taxa_accum_time(data, id = NA_character_, alpha = 1, observation = NULL)
data |
(list or tbl_df, tbl, data.frame) The dataset object returned by |
id |
(character) Identifier of dataset to be used in plot subtitles. Is automatically assigned when |
alpha |
(numeric) Alpha-transparency scale of data points. Useful when many data points overlap. Allowed values are between 0 and 1, where 1 is 100% opaque. Default is 1. |
observation |
(tbl_df, tbl, data.frame) DEPRECATED: Use |
The data
parameter accepts a range of input types but ultimately requires the 9 columns of the observation table.
(gg, ggplot) A gg, ggplot object if assigned to a variable, otherwise a plot to your active graphics device
## Not run:
# Read a dataset of interest
dataset <- read_data("edi.193.5")
# Plot the dataset
plot_taxa_accum_time(dataset)
# Flatten the dataset, manipulate, then plot
dataset %>%
flatten_data() %>%
dplyr::filter(lubridate::as_date(datetime) > "2003-07-01") %>%
plot_taxa_accum_time()
# Plot from the observation table directly
plot_taxa_accum_time(dataset$tables$observation)
## End(Not run)
# Plot the example dataset
plot_taxa_accum_time(ants_L1)
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