plot_taxa_diversity | R Documentation |
Plot diversity (taxa richness) through time
plot_taxa_diversity( data, id = NA_character_, time_window_size = "day", observation = NULL, alpha = 1 )
data |
(list or tbl_df, tbl, data.frame) The dataset object returned by |
id |
(character) Identifier of dataset to be used in plot subtitles. Is automatically assigned when |
time_window_size |
(character) Define the time window over which to aggregate observations for calculating richness. Can be: "day" or "year" |
observation |
(tbl_df, tbl, data.frame) DEPRECATED: Use |
alpha |
(numeric) Alpha-transparency scale of data points. Useful when many data points overlap. Allowed values are between 0 and 1, where 1 is 100% opaque. Default is 1. |
The data
parameter accepts a range of input types but ultimately requires the 9 columns of the observation table.
(gg, ggplot) A gg, ggplot object if assigned to a variable, otherwise a plot to your active graphics device
## Not run: # Read a dataset of interest dataset <- read_data("edi.193.5") # Plot the dataset plot_taxa_diversity(dataset) # Plot the dataset with observations aggregated by year plot_taxa_diversity(dataset, time_window_size = "year") # Flatten the dataset, manipulate, then plot dataset %>% flatten_data() %>% dplyr::filter( lubridate::as_date(datetime) > "2007-01-01") %>% plot_taxa_diversity() # Plot from the observation table directly plot_taxa_diversity(dataset$tables$observation) ## End(Not run) # Plot the example dataset plot_taxa_diversity(ants_L1)
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